Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5461 | 5' | -59.5 | NC_001798.1 | + | 53107 | 0.66 | 0.785388 |
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Target: 5'- gGGcGCGCGGCGCGaGcucCCUGCgGCUGGc -3' miRNA: 3'- -CCaUGUGUCGCGC-Ccu-GGGCG-CGACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 16155 | 0.66 | 0.785388 |
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Target: 5'- cGGggGCACcgAGCGCcacgGGcGGCCCGCGggGAc -3' miRNA: 3'- -CCa-UGUG--UCGCG----CC-CUGGGCGCgaCU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 79387 | 0.66 | 0.785388 |
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Target: 5'- cGG-GCGCgGGCGCGGaGuccgcGCCCGCGCc-- -3' miRNA: 3'- -CCaUGUG-UCGCGCC-C-----UGGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 58409 | 0.66 | 0.785388 |
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Target: 5'- --cGCGCGGCGCaGGcGGCCaGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-CC-CUGGgCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 102101 | 0.66 | 0.785388 |
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Target: 5'- cGUAgGgGGCGUGGGuACgCGCGCg-- -3' miRNA: 3'- cCAUgUgUCGCGCCC-UGgGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 63722 | 0.66 | 0.794236 |
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Target: 5'- uGGUugAUGGUGCGGG-CCacauaggcgcggCGCGcCUGGu -3' miRNA: 3'- -CCAugUGUCGCGCCCuGG------------GCGC-GACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153012 | 0.66 | 0.794236 |
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Target: 5'- cGGUcGC-CGGgGCGGaguccgGGCCCGCGCg-- -3' miRNA: 3'- -CCA-UGuGUCgCGCC------CUGGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 154280 | 0.66 | 0.794236 |
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Target: 5'- cGUGCGCAGCcCGGG--CCGUGUUGc -3' miRNA: 3'- cCAUGUGUCGcGCCCugGGCGCGACu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 98532 | 0.66 | 0.802082 |
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Target: 5'- -aUGCGCGGgG-GGGGCUugauuugCGCGCUGGu -3' miRNA: 3'- ccAUGUGUCgCgCCCUGG-------GCGCGACU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 53869 | 0.66 | 0.802947 |
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Target: 5'- uGGcGCuCAGCGgGagucuggaGGGCCCGCGgaGAc -3' miRNA: 3'- -CCaUGuGUCGCgC--------CCUGGGCGCgaCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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