miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 35811 0.68 0.641761
Target:  5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3'
miRNA:   3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 153823 0.68 0.641761
Target:  5'- cGGcagGCGCGGCguGCGGGGCCUccgGCGCc-- -3'
miRNA:   3'- -CCa--UGUGUCG--CGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 43024 0.69 0.631833
Target:  5'- cGGgg-GgAGCGCGGGGCCCcggGCGCa-- -3'
miRNA:   3'- -CCaugUgUCGCGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 132823 0.69 0.621905
Target:  5'- -aUGCAC-GUGCGGuucuggggccacGACgCCGCGCUGAc -3'
miRNA:   3'- ccAUGUGuCGCGCC------------CUG-GGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 111494 0.69 0.602077
Target:  5'- -aUGCACGGCGCGGaccuCCuCGCGCg-- -3'
miRNA:   3'- ccAUGUGUCGCGCCcu--GG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 1730 0.69 0.602077
Target:  5'- cGGU--GCGGCGCaGGuCCCGCGCc-- -3'
miRNA:   3'- -CCAugUGUCGCGcCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 85256 0.69 0.582333
Target:  5'- --cGCgGCcGCGCGGGGCCgCGCGCg-- -3'
miRNA:   3'- ccaUG-UGuCGCGCCCUGG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 52872 0.7 0.552983
Target:  5'- cGUGCugGGgcCGCGGG-UCCGCGCgugGAc -3'
miRNA:   3'- cCAUGugUC--GCGCCCuGGGCGCGa--CU- -5'
5461 5' -59.5 NC_001798.1 + 74031 0.7 0.552983
Target:  5'- aGUACccgGCGGCGCGcGGcgGCCUGCGUUGc -3'
miRNA:   3'- cCAUG---UGUCGCGC-CC--UGGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 26451 0.7 0.552983
Target:  5'- --gACGCGGaCGCGGG-CCCGCccccgcagauacGCUGGg -3'
miRNA:   3'- ccaUGUGUC-GCGCCCuGGGCG------------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 121548 0.7 0.543295
Target:  5'- -cUGCGCcuGGCGUGGGGCCCGUGg--- -3'
miRNA:   3'- ccAUGUG--UCGCGCCCUGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 52419 0.7 0.543295
Target:  5'- cGUGCugGGCGCGGccGugUaCGCGCUGc -3'
miRNA:   3'- cCAUGugUCGCGCC--CugG-GCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 130311 0.71 0.505155
Target:  5'- --gGCGCGGUGcCGGGugUCGCGCa-- -3'
miRNA:   3'- ccaUGUGUCGC-GCCCugGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 36394 0.71 0.502339
Target:  5'- -cUGCGCGGCGcCGGGGCCCcccugccgggcgggGCGgUGGg -3'
miRNA:   3'- ccAUGUGUCGC-GCCCUGGG--------------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 47584 0.71 0.495797
Target:  5'- cGGgaaGCGCcGCGCGGGACCCacgaggaGCUGu -3'
miRNA:   3'- -CCa--UGUGuCGCGCCCUGGGcg-----CGACu -5'
5461 5' -59.5 NC_001798.1 + 31660 0.71 0.495797
Target:  5'- cGG-ACGCGGC-CGGG-CCCGCGCc-- -3'
miRNA:   3'- -CCaUGUGUCGcGCCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 9144 0.71 0.486518
Target:  5'- cGGcACGCgGGCGCGGcGccGCCCGCGCcGGg -3'
miRNA:   3'- -CCaUGUG-UCGCGCC-C--UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 153233 0.72 0.450268
Target:  5'- cGGgccCGCGGCgGCGgaGGACCCGCGCg-- -3'
miRNA:   3'- -CCau-GUGUCG-CGC--CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 132700 0.72 0.450268
Target:  5'- --gGCGCAgGCGCGGGGgUCGCGCa-- -3'
miRNA:   3'- ccaUGUGU-CGCGCCCUgGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 44194 0.72 0.424079
Target:  5'- uGGUGCacgaACAGCGUGGuGAggCCGCGCUGc -3'
miRNA:   3'- -CCAUG----UGUCGCGCC-CUg-GGCGCGACu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.