Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 35811 | 0.68 | 0.641761 |
Target: 5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3' miRNA: 3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 153823 | 0.68 | 0.641761 |
Target: 5'- cGGcagGCGCGGCguGCGGGGCCUccgGCGCc-- -3' miRNA: 3'- -CCa--UGUGUCG--CGCCCUGGG---CGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 43024 | 0.69 | 0.631833 |
Target: 5'- cGGgg-GgAGCGCGGGGCCCcggGCGCa-- -3' miRNA: 3'- -CCaugUgUCGCGCCCUGGG---CGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 132823 | 0.69 | 0.621905 |
Target: 5'- -aUGCAC-GUGCGGuucuggggccacGACgCCGCGCUGAc -3' miRNA: 3'- ccAUGUGuCGCGCC------------CUG-GGCGCGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 111494 | 0.69 | 0.602077 |
Target: 5'- -aUGCACGGCGCGGaccuCCuCGCGCg-- -3' miRNA: 3'- ccAUGUGUCGCGCCcu--GG-GCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 1730 | 0.69 | 0.602077 |
Target: 5'- cGGU--GCGGCGCaGGuCCCGCGCc-- -3' miRNA: 3'- -CCAugUGUCGCGcCCuGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 85256 | 0.69 | 0.582333 |
Target: 5'- --cGCgGCcGCGCGGGGCCgCGCGCg-- -3' miRNA: 3'- ccaUG-UGuCGCGCCCUGG-GCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 52872 | 0.7 | 0.552983 |
Target: 5'- cGUGCugGGgcCGCGGG-UCCGCGCgugGAc -3' miRNA: 3'- cCAUGugUC--GCGCCCuGGGCGCGa--CU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 74031 | 0.7 | 0.552983 |
Target: 5'- aGUACccgGCGGCGCGcGGcgGCCUGCGUUGc -3' miRNA: 3'- cCAUG---UGUCGCGC-CC--UGGGCGCGACu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 26451 | 0.7 | 0.552983 |
Target: 5'- --gACGCGGaCGCGGG-CCCGCccccgcagauacGCUGGg -3' miRNA: 3'- ccaUGUGUC-GCGCCCuGGGCG------------CGACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 121548 | 0.7 | 0.543295 |
Target: 5'- -cUGCGCcuGGCGUGGGGCCCGUGg--- -3' miRNA: 3'- ccAUGUG--UCGCGCCCUGGGCGCgacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 52419 | 0.7 | 0.543295 |
Target: 5'- cGUGCugGGCGCGGccGugUaCGCGCUGc -3' miRNA: 3'- cCAUGugUCGCGCC--CugG-GCGCGACu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 130311 | 0.71 | 0.505155 |
Target: 5'- --gGCGCGGUGcCGGGugUCGCGCa-- -3' miRNA: 3'- ccaUGUGUCGC-GCCCugGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 36394 | 0.71 | 0.502339 |
Target: 5'- -cUGCGCGGCGcCGGGGCCCcccugccgggcgggGCGgUGGg -3' miRNA: 3'- ccAUGUGUCGC-GCCCUGGG--------------CGCgACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 47584 | 0.71 | 0.495797 |
Target: 5'- cGGgaaGCGCcGCGCGGGACCCacgaggaGCUGu -3' miRNA: 3'- -CCa--UGUGuCGCGCCCUGGGcg-----CGACu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 31660 | 0.71 | 0.495797 |
Target: 5'- cGG-ACGCGGC-CGGG-CCCGCGCc-- -3' miRNA: 3'- -CCaUGUGUCGcGCCCuGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 9144 | 0.71 | 0.486518 |
Target: 5'- cGGcACGCgGGCGCGGcGccGCCCGCGCcGGg -3' miRNA: 3'- -CCaUGUG-UCGCGCC-C--UGGGCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 153233 | 0.72 | 0.450268 |
Target: 5'- cGGgccCGCGGCgGCGgaGGACCCGCGCg-- -3' miRNA: 3'- -CCau-GUGUCG-CGC--CCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 132700 | 0.72 | 0.450268 |
Target: 5'- --gGCGCAgGCGCGGGGgUCGCGCa-- -3' miRNA: 3'- ccaUGUGU-CGCGCCCUgGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 44194 | 0.72 | 0.424079 |
Target: 5'- uGGUGCacgaACAGCGUGGuGAggCCGCGCUGc -3' miRNA: 3'- -CCAUG----UGUCGCGCC-CUg-GGCGCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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