miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 63306 0.66 0.77641
Target:  5'- --gGCcCAGCa-GGcGAUCCGCGCUGAa -3'
miRNA:   3'- ccaUGuGUCGcgCC-CUGGGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 63722 0.66 0.794236
Target:  5'- uGGUugAUGGUGCGGG-CCacauaggcgcggCGCGcCUGGu -3'
miRNA:   3'- -CCAugUGUCGCGCCCuGG------------GCGC-GACU- -5'
5461 5' -59.5 NC_001798.1 + 65078 0.68 0.691144
Target:  5'- gGGUGCACuggGGCGUGGGuuguagCGUGCUGu -3'
miRNA:   3'- -CCAUGUG---UCGCGCCCugg---GCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 65671 0.66 0.77641
Target:  5'- aGGUACACGcacGCcccgGUGGGGCgCGUGCUc- -3'
miRNA:   3'- -CCAUGUGU---CG----CGCCCUGgGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 70983 0.67 0.71063
Target:  5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3'
miRNA:   3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5'
5461 5' -59.5 NC_001798.1 + 71404 0.67 0.74878
Target:  5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3'
miRNA:   3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 74031 0.7 0.552983
Target:  5'- aGUACccgGCGGCGCGcGGcgGCCUGCGUUGc -3'
miRNA:   3'- cCAUG---UGUCGCGC-CC--UGGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 74256 0.67 0.71063
Target:  5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3'
miRNA:   3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 76249 0.66 0.775505
Target:  5'- --aACACA-CGCGGGACgucgcucagcgcgCCGCGCUc- -3'
miRNA:   3'- ccaUGUGUcGCGCCCUG-------------GGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 77421 0.66 0.758097
Target:  5'- uGGUAguCcaGGCGCGccGGGCCUGCGCc-- -3'
miRNA:   3'- -CCAUguG--UCGCGC--CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 79387 0.66 0.785388
Target:  5'- cGG-GCGCgGGCGCGGaGuccgcGCCCGCGCc-- -3'
miRNA:   3'- -CCaUGUG-UCGCGCC-C-----UGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 84448 0.68 0.66159
Target:  5'- --cGCGCAGCgugGCGGGaacaaugaGCCUgauGCGCUGAa -3'
miRNA:   3'- ccaUGUGUCG---CGCCC--------UGGG---CGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 85256 0.69 0.582333
Target:  5'- --cGCgGCcGCGCGGGGCCgCGCGCg-- -3'
miRNA:   3'- ccaUG-UGuCGCGCCCUGG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 88247 0.66 0.767311
Target:  5'- uGUACGC-GCGCGGGugUCugcucaguucgGCGgUGAg -3'
miRNA:   3'- cCAUGUGuCGCGCCCugGG-----------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 95011 0.72 0.414707
Target:  5'- --aGgGCGGCGCGGGccuggaggccgggGCCCGCGCgcUGAu -3'
miRNA:   3'- ccaUgUGUCGCGCCC-------------UGGGCGCG--ACU- -5'
5461 5' -59.5 NC_001798.1 + 95305 0.68 0.658619
Target:  5'- uGUGCGCGGCgucgagucucggggGCGGGGCCCacgagcauuCGCUGu -3'
miRNA:   3'- cCAUGUGUCG--------------CGCCCUGGGc--------GCGACu -5'
5461 5' -59.5 NC_001798.1 + 96338 0.67 0.739366
Target:  5'- aGGUGCGCGuGCuGCGGcggcaccugcGGCCgGgGCUGGa -3'
miRNA:   3'- -CCAUGUGU-CG-CGCC----------CUGGgCgCGACU- -5'
5461 5' -59.5 NC_001798.1 + 97542 0.68 0.671474
Target:  5'- cGGagGCGUGGCGCGGGgacGCCCGCGagcGAg -3'
miRNA:   3'- -CCa-UGUGUCGCGCCC---UGGGCGCga-CU- -5'
5461 5' -59.5 NC_001798.1 + 98532 0.66 0.802082
Target:  5'- -aUGCGCGGgG-GGGGCUugauuugCGCGCUGGu -3'
miRNA:   3'- ccAUGUGUCgCgCCCUGG-------GCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 102101 0.66 0.785388
Target:  5'- cGUAgGgGGCGUGGGuACgCGCGCg-- -3'
miRNA:   3'- cCAUgUgUCGCGCCC-UGgGCGCGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.