miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 102570 0.67 0.720282
Target:  5'- cGGgugGCGgGGCGCGGauuGCCCGgugacgaGCUGAu -3'
miRNA:   3'- -CCa--UGUgUCGCGCCc--UGGGCg------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 105188 0.78 0.188457
Target:  5'- ---cCGCGGCgGCGGGGCCCGCGgUGGg -3'
miRNA:   3'- ccauGUGUCG-CGCCCUGGGCGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 111130 0.67 0.69994
Target:  5'- --aGCGCAGCaggGCGGcgcugucGGCCCGCGCg-- -3'
miRNA:   3'- ccaUGUGUCG---CGCC-------CUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 111494 0.69 0.602077
Target:  5'- -aUGCACGGCGCGGaccuCCuCGCGCg-- -3'
miRNA:   3'- ccAUGUGUCGCGCCcu--GG-GCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 111773 0.72 0.415554
Target:  5'- cGGUugGgGGCGCGGGuGCCCGUGa--- -3'
miRNA:   3'- -CCAugUgUCGCGCCC-UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 117094 0.75 0.307934
Target:  5'- --aGCGCGGCGgGGGAgaaCGCGCUGAc -3'
miRNA:   3'- ccaUGUGUCGCgCCCUgg-GCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 117566 0.68 0.680344
Target:  5'- aGGUGcCGCGGCGCGccggcauGGACCaCGgGCagGAu -3'
miRNA:   3'- -CCAU-GUGUCGCGC-------CCUGG-GCgCGa-CU- -5'
5461 5' -59.5 NC_001798.1 + 119516 0.67 0.700914
Target:  5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3'
miRNA:   3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 121548 0.7 0.543295
Target:  5'- -cUGCGCcuGGCGUGGGGCCCGUGg--- -3'
miRNA:   3'- ccAUGUG--UCGCGCCCUGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 123217 0.68 0.66159
Target:  5'- cGGUucugucGCGgGGCGgcuaCGGGACCCGgccuugucCGCUGAc -3'
miRNA:   3'- -CCA------UGUgUCGC----GCCCUGGGC--------GCGACU- -5'
5461 5' -59.5 NC_001798.1 + 130311 0.71 0.505155
Target:  5'- --gGCGCGGUGcCGGGugUCGCGCa-- -3'
miRNA:   3'- ccaUGUGUCGC-GCCCugGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 131584 0.68 0.690165
Target:  5'- uGGUccGCGCgccaaugGGCuCGGGAaaaacuaCCGCGCUGAu -3'
miRNA:   3'- -CCA--UGUG-------UCGcGCCCUg------GGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 132700 0.72 0.450268
Target:  5'- --gGCGCAgGCGCGGGGgUCGCGCa-- -3'
miRNA:   3'- ccaUGUGU-CGCGCCCUgGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 132823 0.69 0.621905
Target:  5'- -aUGCAC-GUGCGGuucuggggccacGACgCCGCGCUGAc -3'
miRNA:   3'- ccAUGUGuCGCGCC------------CUG-GGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 132910 0.66 0.75717
Target:  5'- aGGgcC-CAGCgggaucuGCGGGAgCUGCGCUGc -3'
miRNA:   3'- -CCauGuGUCG-------CGCCCUgGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 134681 0.74 0.336375
Target:  5'- gGGU-CACGGCGCGGGugCUGCuGCc-- -3'
miRNA:   3'- -CCAuGUGUCGCGCCCugGGCG-CGacu -5'
5461 5' -59.5 NC_001798.1 + 142153 0.66 0.767311
Target:  5'- uGGUGCAC-GUGUuugagucaGGGACgCGCGCg-- -3'
miRNA:   3'- -CCAUGUGuCGCG--------CCCUGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 143101 0.66 0.767311
Target:  5'- uGGUACGCAuGUGCGuugcGGcggugcuccgcGCuuGCGCUGGc -3'
miRNA:   3'- -CCAUGUGU-CGCGC----CC-----------UGggCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 146829 0.68 0.691144
Target:  5'- cGGggGCGCGGCaGCaacgaacgcaGGGGCCCGcCGCcGAu -3'
miRNA:   3'- -CCa-UGUGUCG-CG----------CCCUGGGC-GCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 149457 0.67 0.74878
Target:  5'- gGGUGCgGCGGCuccacGCGGGGgCCGCGg--- -3'
miRNA:   3'- -CCAUG-UGUCG-----CGCCCUgGGCGCgacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.