Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5461 | 5' | -59.5 | NC_001798.1 | + | 149739 | 0.67 | 0.739366 |
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Target: 5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3' miRNA: 3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 150374 | 0.68 | 0.681328 |
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Target: 5'- cGGcGgGCGGCGCGGG-CCCGgcCGCg-- -3' miRNA: 3'- -CCaUgUGUCGCGCCCuGGGC--GCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 150421 | 0.68 | 0.681328 |
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Target: 5'- gGGgcgGCgGCGGCGCGGGGCggacuccggaCGCGCgGGg -3' miRNA: 3'- -CCa--UG-UGUCGCGCCCUGg---------GCGCGaCU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 150557 | 0.67 | 0.720282 |
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Target: 5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3' miRNA: 3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153012 | 0.66 | 0.794236 |
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Target: 5'- cGGUcGC-CGGgGCGGaguccgGGCCCGCGCg-- -3' miRNA: 3'- -CCA-UGuGUCgCGCC------CUGGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153086 | 0.66 | 0.767311 |
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Target: 5'- cGGcgGgGCGGCGCcGGGCCCuCGCgGAu -3' miRNA: 3'- -CCa-UgUGUCGCGcCCUGGGcGCGaCU- -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153233 | 0.72 | 0.450268 |
|
Target: 5'- cGGgccCGCGGCgGCGgaGGACCCGCGCg-- -3' miRNA: 3'- -CCau-GUGUCG-CGC--CCUGGGCGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153739 | 0.67 | 0.7422 |
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Target: 5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3' miRNA: 3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 153823 | 0.68 | 0.641761 |
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Target: 5'- cGGcagGCGCGGCguGCGGGGCCUccgGCGCc-- -3' miRNA: 3'- -CCa--UGUGUCG--CGCCCUGGG---CGCGacu -5' |
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| 5461 | 5' | -59.5 | NC_001798.1 | + | 154280 | 0.66 | 0.794236 |
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Target: 5'- cGUGCGCAGCcCGGG--CCGUGUUGc -3' miRNA: 3'- cCAUGUGUCGcGCCCugGGCGCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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