miRNA display CGI


Results 61 - 80 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 43024 0.69 0.631833
Target:  5'- cGGgg-GgAGCGCGGGGCCCcggGCGCa-- -3'
miRNA:   3'- -CCaugUgUCGCGCCCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 36394 0.71 0.502339
Target:  5'- -cUGCGCGGCGcCGGGGCCCcccugccgggcgggGCGgUGGg -3'
miRNA:   3'- ccAUGUGUCGC-GCCCUGGG--------------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 35811 0.68 0.641761
Target:  5'- cGGggGgGgGGCGuCGGGACUCGCGgaGGg -3'
miRNA:   3'- -CCa-UgUgUCGC-GCCCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 35278 0.68 0.691144
Target:  5'- --cACGCGG-GCGGGGCUCGgGCUc- -3'
miRNA:   3'- ccaUGUGUCgCGCCCUGGGCgCGAcu -5'
5461 5' -59.5 NC_001798.1 + 34799 0.67 0.700914
Target:  5'- --gGCGCGGCcCGGGGCCCcggggcccccGCGCUc- -3'
miRNA:   3'- ccaUGUGUCGcGCCCUGGG----------CGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 31660 0.71 0.495797
Target:  5'- cGG-ACGCGGC-CGGG-CCCGCGCc-- -3'
miRNA:   3'- -CCaUGUGUCGcGCCCuGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 31337 0.67 0.739366
Target:  5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3'
miRNA:   3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 31151 0.66 0.767311
Target:  5'- cGGggGCgGCGGUGCGGGggcgACCCGCGg--- -3'
miRNA:   3'- -CCa-UG-UGUCGCGCCC----UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 30182 0.77 0.211058
Target:  5'- cGGgggACACGGCGCGGGGgucccgccucacgcCCCGCGCc-- -3'
miRNA:   3'- -CCa--UGUGUCGCGCCCU--------------GGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 27489 0.66 0.767311
Target:  5'- cGGggGCG-GGCGCGGGAaaaaagCCGCGCgGGg -3'
miRNA:   3'- -CCa-UGUgUCGCGCCCUg-----GGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 27247 0.67 0.700914
Target:  5'- cGGgggAgGCGGcCGCGGGACCgcagccccguggCGCGCgGGg -3'
miRNA:   3'- -CCa--UgUGUC-GCGCCCUGG------------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 26451 0.7 0.552983
Target:  5'- --gACGCGGaCGCGGG-CCCGCccccgcagauacGCUGGg -3'
miRNA:   3'- ccaUGUGUC-GCGCCCuGGGCG------------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 26336 0.66 0.767311
Target:  5'- gGGgcgcgACGCcguGCGCGGcGGCCCG-GCgGAg -3'
miRNA:   3'- -CCa----UGUGu--CGCGCC-CUGGGCgCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 25958 0.8 0.147362
Target:  5'- cGUGCgcuggccgGCGGCGCGGGACCUGCGCc-- -3'
miRNA:   3'- cCAUG--------UGUCGCGCCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 24903 0.68 0.671474
Target:  5'- uGGgcccgGCGCuGcCGCGGaGCCCGCGCcugcUGAg -3'
miRNA:   3'- -CCa----UGUGuC-GCGCCcUGGGCGCG----ACU- -5'
5461 5' -59.5 NC_001798.1 + 24807 0.75 0.300442
Target:  5'- uGGUGCugAugcgccuGCGCgGGGACCUGCGCgUGGc -3'
miRNA:   3'- -CCAUGugU-------CGCG-CCCUGGGCGCG-ACU- -5'
5461 5' -59.5 NC_001798.1 + 23787 0.66 0.767311
Target:  5'- gGGUACGuCAGCG-GGGAgCCGUGg--- -3'
miRNA:   3'- -CCAUGU-GUCGCgCCCUgGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 23647 0.68 0.691144
Target:  5'- cGGgcCGCcuggAGCGCcgccGGGCCCGCGCg-- -3'
miRNA:   3'- -CCauGUG----UCGCGc---CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 23521 0.67 0.700914
Target:  5'- ---cCGCGG-GCGGGACCCucgGCGCgGAc -3'
miRNA:   3'- ccauGUGUCgCGCCCUGGG---CGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 21957 0.66 0.77641
Target:  5'- --gGCGgAGCGCGGGAugacgcgggcCCCGgGCa-- -3'
miRNA:   3'- ccaUGUgUCGCGCCCU----------GGGCgCGacu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.