Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 16155 | 0.66 | 0.785388 |
Target: 5'- cGGggGCACcgAGCGCcacgGGcGGCCCGCGggGAc -3' miRNA: 3'- -CCa-UGUG--UCGCG----CC-CUGGGCGCgaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 9144 | 0.71 | 0.486518 |
Target: 5'- cGGcACGCgGGCGCGGcGccGCCCGCGCcGGg -3' miRNA: 3'- -CCaUGUG-UCGCGCC-C--UGGGCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5862 | 0.67 | 0.69994 |
Target: 5'- --aGCACuGGCGCccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- ccaUGUG-UCGCG-------CCCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5718 | 0.67 | 0.73842 |
Target: 5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 5446 | 0.66 | 0.773692 |
Target: 5'- --aGCGCccGGCGCGGGcggcuuccgcuuccGCCCGCGaugcuaaUGAg -3' miRNA: 3'- ccaUGUG--UCGCGCCC--------------UGGGCGCg------ACU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2569 | 0.67 | 0.739366 |
Target: 5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3' miRNA: 3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2274 | 0.67 | 0.71932 |
Target: 5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3' miRNA: 3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 2210 | 0.67 | 0.739366 |
Target: 5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 1730 | 0.69 | 0.602077 |
Target: 5'- cGGU--GCGGCGCaGGuCCCGCGCc-- -3' miRNA: 3'- -CCAugUGUCGCGcCCuGGGCGCGacu -5' |
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5461 | 5' | -59.5 | NC_001798.1 | + | 1537 | 0.74 | 0.343779 |
Target: 5'- gGGaGCACGGCGCGGcGguACUCGCGCgggGAc -3' miRNA: 3'- -CCaUGUGUCGCGCC-C--UGGGCGCGa--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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