miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 102101 0.66 0.785388
Target:  5'- cGUAgGgGGCGUGGGuACgCGCGCg-- -3'
miRNA:   3'- cCAUgUgUCGCGCCC-UGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 63722 0.66 0.794236
Target:  5'- uGGUugAUGGUGCGGG-CCacauaggcgcggCGCGcCUGGu -3'
miRNA:   3'- -CCAugUGUCGCGCCCuGG------------GCGC-GACU- -5'
5461 5' -59.5 NC_001798.1 + 153012 0.66 0.794236
Target:  5'- cGGUcGC-CGGgGCGGaguccgGGCCCGCGCg-- -3'
miRNA:   3'- -CCA-UGuGUCgCGCC------CUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 154280 0.66 0.794236
Target:  5'- cGUGCGCAGCcCGGG--CCGUGUUGc -3'
miRNA:   3'- cCAUGUGUCGcGCCCugGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 98532 0.66 0.802082
Target:  5'- -aUGCGCGGgG-GGGGCUugauuugCGCGCUGGu -3'
miRNA:   3'- ccAUGUGUCgCgCCCUGG-------GCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 5446 0.66 0.773692
Target:  5'- --aGCGCccGGCGCGGGcggcuuccgcuuccGCCCGCGaugcuaaUGAg -3'
miRNA:   3'- ccaUGUG--UCGCGCCC--------------UGGGCGCg------ACU- -5'
5461 5' -59.5 NC_001798.1 + 153086 0.66 0.767311
Target:  5'- cGGcgGgGCGGCGCcGGGCCCuCGCgGAu -3'
miRNA:   3'- -CCa-UgUGUCGCGcCCUGGGcGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 2569 0.67 0.739366
Target:  5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3'
miRNA:   3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 153739 0.67 0.7422
Target:  5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3'
miRNA:   3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 71404 0.67 0.74878
Target:  5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3'
miRNA:   3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 149457 0.67 0.74878
Target:  5'- gGGUGCgGCGGCuccacGCGGGGgCCGCGg--- -3'
miRNA:   3'- -CCAUG-UGUCG-----CGCCCUgGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 132910 0.66 0.75717
Target:  5'- aGGgcC-CAGCgggaucuGCGGGAgCUGCGCUGc -3'
miRNA:   3'- -CCauGuGUCG-------CGCCCUgGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 77421 0.66 0.758097
Target:  5'- uGGUAguCcaGGCGCGccGGGCCUGCGCc-- -3'
miRNA:   3'- -CCAUguG--UCGCGC--CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 142153 0.66 0.767311
Target:  5'- uGGUGCAC-GUGUuugagucaGGGACgCGCGCg-- -3'
miRNA:   3'- -CCAUGUGuCGCG--------CCCUGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 23787 0.66 0.767311
Target:  5'- gGGUACGuCAGCG-GGGAgCCGUGg--- -3'
miRNA:   3'- -CCAUGU-GUCGCgCCCUgGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 88247 0.66 0.767311
Target:  5'- uGUACGC-GCGCGGGugUCugcucaguucgGCGgUGAg -3'
miRNA:   3'- cCAUGUGuCGCGCCCugGG-----------CGCgACU- -5'
5461 5' -59.5 NC_001798.1 + 143101 0.66 0.767311
Target:  5'- uGGUACGCAuGUGCGuugcGGcggugcuccgcGCuuGCGCUGGc -3'
miRNA:   3'- -CCAUGUGU-CGCGC----CC-----------UGggCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 26336 0.66 0.767311
Target:  5'- gGGgcgcgACGCcguGCGCGGcGGCCCG-GCgGAg -3'
miRNA:   3'- -CCa----UGUGu--CGCGCC-CUGGGCgCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 27489 0.66 0.767311
Target:  5'- cGGggGCG-GGCGCGGGAaaaaagCCGCGCgGGg -3'
miRNA:   3'- -CCa-UGUgUCGCGCCCUg-----GGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 31151 0.66 0.767311
Target:  5'- cGGggGCgGCGGUGCGGGggcgACCCGCGg--- -3'
miRNA:   3'- -CCa-UG-UGUCGCGCCC----UGGGCGCgacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.