Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 143101 | 0.66 | 0.767311 |
Target: 5'- uGGUACGCAuGUGCGuugcGGcggugcuccgcGCuuGCGCUGGc -3' miRNA: 3'- -CCAUGUGU-CGCGC----CC-----------UGggCGCGACU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 88247 | 0.66 | 0.767311 |
Target: 5'- uGUACGC-GCGCGGGugUCugcucaguucgGCGgUGAg -3' miRNA: 3'- cCAUGUGuCGCGCCCugGG-----------CGCgACU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 96338 | 0.67 | 0.739366 |
Target: 5'- aGGUGCGCGuGCuGCGGcggcaccugcGGCCgGgGCUGGa -3' miRNA: 3'- -CCAUGUGU-CG-CGCC----------CUGGgCgCGACU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 31337 | 0.67 | 0.739366 |
Target: 5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3' miRNA: 3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 5718 | 0.67 | 0.73842 |
Target: 5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3' miRNA: 3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 102570 | 0.67 | 0.720282 |
Target: 5'- cGGgugGCGgGGCGCGGauuGCCCGgugacgaGCUGAu -3' miRNA: 3'- -CCa--UGUgUCGCGCCc--UGGGCg------CGACU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 150557 | 0.67 | 0.720282 |
Target: 5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3' miRNA: 3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 2274 | 0.67 | 0.71932 |
Target: 5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3' miRNA: 3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 74256 | 0.67 | 0.71063 |
Target: 5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3' miRNA: 3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 70983 | 0.67 | 0.71063 |
Target: 5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3' miRNA: 3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 149739 | 0.67 | 0.739366 |
Target: 5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3' miRNA: 3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 2210 | 0.67 | 0.739366 |
Target: 5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3' miRNA: 3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 23787 | 0.66 | 0.767311 |
Target: 5'- gGGUACGuCAGCG-GGGAgCCGUGg--- -3' miRNA: 3'- -CCAUGU-GUCGCgCCCUgGGCGCgacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 142153 | 0.66 | 0.767311 |
Target: 5'- uGGUGCAC-GUGUuugagucaGGGACgCGCGCg-- -3' miRNA: 3'- -CCAUGUGuCGCG--------CCCUGgGCGCGacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 77421 | 0.66 | 0.758097 |
Target: 5'- uGGUAguCcaGGCGCGccGGGCCUGCGCc-- -3' miRNA: 3'- -CCAUguG--UCGCGC--CCUGGGCGCGacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 132910 | 0.66 | 0.75717 |
Target: 5'- aGGgcC-CAGCgggaucuGCGGGAgCUGCGCUGc -3' miRNA: 3'- -CCauGuGUCG-------CGCCCUgGGCGCGACu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 149457 | 0.67 | 0.74878 |
Target: 5'- gGGUGCgGCGGCuccacGCGGGGgCCGCGg--- -3' miRNA: 3'- -CCAUG-UGUCG-----CGCCCUgGGCGCgacu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 71404 | 0.67 | 0.74878 |
Target: 5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3' miRNA: 3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 153739 | 0.67 | 0.7422 |
Target: 5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3' miRNA: 3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5' |
|||||||
5461 | 5' | -59.5 | NC_001798.1 | + | 2569 | 0.67 | 0.739366 |
Target: 5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3' miRNA: 3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home