miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 27489 0.66 0.767311
Target:  5'- cGGggGCG-GGCGCGGGAaaaaagCCGCGCgGGg -3'
miRNA:   3'- -CCa-UGUgUCGCGCCCUg-----GGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 31151 0.66 0.767311
Target:  5'- cGGggGCgGCGGUGCGGGggcgACCCGCGg--- -3'
miRNA:   3'- -CCa-UG-UGUCGCGCCC----UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 153086 0.66 0.767311
Target:  5'- cGGcgGgGCGGCGCcGGGCCCuCGCgGAu -3'
miRNA:   3'- -CCa-UgUGUCGCGcCCUGGGcGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 77421 0.66 0.758097
Target:  5'- uGGUAguCcaGGCGCGccGGGCCUGCGCc-- -3'
miRNA:   3'- -CCAUguG--UCGCGC--CCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 132910 0.66 0.75717
Target:  5'- aGGgcC-CAGCgggaucuGCGGGAgCUGCGCUGc -3'
miRNA:   3'- -CCauGuGUCG-------CGCCCUgGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 149457 0.67 0.74878
Target:  5'- gGGUGCgGCGGCuccacGCGGGGgCCGCGg--- -3'
miRNA:   3'- -CCAUG-UGUCG-----CGCCCUgGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 71404 0.67 0.74878
Target:  5'- uGGU----GGCGgGGGuGCCCGCGCgGAc -3'
miRNA:   3'- -CCAugugUCGCgCCC-UGGGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 153739 0.67 0.7422
Target:  5'- uGGUGCGCAGcCguagcgccaggugggGCGGaagggggcgcugcGGCCCGCGCUc- -3'
miRNA:   3'- -CCAUGUGUC-G---------------CGCC-------------CUGGGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 31337 0.67 0.739366
Target:  5'- --gGC-CGGCGgGGGGCgCGCGCa-- -3'
miRNA:   3'- ccaUGuGUCGCgCCCUGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 96338 0.67 0.739366
Target:  5'- aGGUGCGCGuGCuGCGGcggcaccugcGGCCgGgGCUGGa -3'
miRNA:   3'- -CCAUGUGU-CG-CGCC----------CUGGgCgCGACU- -5'
5461 5' -59.5 NC_001798.1 + 149739 0.67 0.739366
Target:  5'- cGGcGCAgCAGCGCGGGGgCCGagGgaGGu -3'
miRNA:   3'- -CCaUGU-GUCGCGCCCUgGGCg-CgaCU- -5'
5461 5' -59.5 NC_001798.1 + 2210 0.67 0.739366
Target:  5'- --cGCGCGGCGCaGcGGGCCCgagGCGCg-- -3'
miRNA:   3'- ccaUGUGUCGCG-C-CCUGGG---CGCGacu -5'
5461 5' -59.5 NC_001798.1 + 2569 0.67 0.739366
Target:  5'- cGGccGCGgGGCGgGGGGCguCCGCGCg-- -3'
miRNA:   3'- -CCa-UGUgUCGCgCCCUG--GGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 5718 0.67 0.73842
Target:  5'- aGUGCG-AGCGCuggcgcccugcccGGGGCCCGCGUc-- -3'
miRNA:   3'- cCAUGUgUCGCG-------------CCCUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 102570 0.67 0.720282
Target:  5'- cGGgugGCGgGGCGCGGauuGCCCGgugacgaGCUGAu -3'
miRNA:   3'- -CCa--UGUgUCGCGCCc--UGGGCg------CGACU- -5'
5461 5' -59.5 NC_001798.1 + 150557 0.67 0.720282
Target:  5'- aGGagaGCGGCcCGGGGCCCGCGg--- -3'
miRNA:   3'- -CCaugUGUCGcGCCCUGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 2274 0.67 0.71932
Target:  5'- gGGgcgGCGCAGCGCGcGGCCagcgaggccagcgCGCGCgGGu -3'
miRNA:   3'- -CCa--UGUGUCGCGCcCUGG-------------GCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 74256 0.67 0.71063
Target:  5'- --cGCACGGCcugcccGCGGGaacGCCCGCGUUu- -3'
miRNA:   3'- ccaUGUGUCG------CGCCC---UGGGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 70983 0.67 0.71063
Target:  5'- --cACACGGUGCGGGAgaucgaCCCG-GCUa- -3'
miRNA:   3'- ccaUGUGUCGCGCCCU------GGGCgCGAcu -5'
5461 5' -59.5 NC_001798.1 + 119516 0.67 0.700914
Target:  5'- cGGggGCA-GGCGUguugggaaGGGACCCGCGgaGGa -3'
miRNA:   3'- -CCa-UGUgUCGCG--------CCCUGGGCGCgaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.