Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5462 | 3' | -58.6 | NC_001798.1 | + | 3330 | 0.69 | 0.670754 |
Target: 5'- cGG-CG-GCGGgcuUCCCGcGGGCgUCGUCg -3' miRNA: 3'- -CCaGCgCGCCau-AGGGC-CCUG-AGCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 4079 | 0.7 | 0.611465 |
Target: 5'- cGGUCGcCGCGGgggUCCGGGccggggcggGCUCGg- -3' miRNA: 3'- -CCAGC-GCGCCauaGGGCCC---------UGAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 13079 | 0.66 | 0.843086 |
Target: 5'- aGGagGCGCGGg--CCCGGuGCUCc-- -3' miRNA: 3'- -CCagCGCGCCauaGGGCCcUGAGcag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 14551 | 0.68 | 0.737505 |
Target: 5'- aGUUGCGCaucucgaGGgc-CCCGGGACaCGUCu -3' miRNA: 3'- cCAGCGCG-------CCauaGGGCCCUGaGCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 15264 | 0.67 | 0.801901 |
Target: 5'- gGGUaCGgGCGGUGcCCCGGGuucCgggCGUg -3' miRNA: 3'- -CCA-GCgCGCCAUaGGGCCCu--Ga--GCAg -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 16054 | 0.66 | 0.818858 |
Target: 5'- --aCGCGUGGUAggucgCUgGGGGCggcgggCGUCu -3' miRNA: 3'- ccaGCGCGCCAUa----GGgCCCUGa-----GCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 29913 | 0.66 | 0.850812 |
Target: 5'- uGGUCGCggGCGGUGggCUCGGGggcgggacGCUUGa- -3' miRNA: 3'- -CCAGCG--CGCCAUa-GGGCCC--------UGAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 30966 | 0.67 | 0.810455 |
Target: 5'- gGGUCGgGCGGggGUCgggCGGGGgUCGg- -3' miRNA: 3'- -CCAGCgCGCCa-UAGg--GCCCUgAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 30999 | 0.67 | 0.810455 |
Target: 5'- gGGUCGgGCGGggGUCgggCGGGGgUCGg- -3' miRNA: 3'- -CCAGCgCGCCa-UAGg--GCCCUgAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 31054 | 0.68 | 0.757135 |
Target: 5'- gGGUCGgGCGGggGUcgggcacuaaCCgGGGGCUCccGUCu -3' miRNA: 3'- -CCAGCgCGCCa-UA----------GGgCCCUGAG--CAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 36315 | 0.68 | 0.719416 |
Target: 5'- cGGg-GCGCGGgccgGggCCGGGGCUCGc- -3' miRNA: 3'- -CCagCGCGCCa---UagGGCCCUGAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 37692 | 0.67 | 0.810455 |
Target: 5'- cGUCGCGUGGUAUUuaCCGGG-UUCc-- -3' miRNA: 3'- cCAGCGCGCCAUAG--GGCCCuGAGcag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 39758 | 0.66 | 0.842303 |
Target: 5'- --cCGUGCGGU-UCCCGGGGggaagccgaccgcCUgGUCc -3' miRNA: 3'- ccaGCGCGCCAuAGGGCCCU-------------GAgCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 40124 | 0.68 | 0.75621 |
Target: 5'- aGGUCGCcggggcugggaugGCgGGUGUCCUccgagGGGGCgcgUGUCg -3' miRNA: 3'- -CCAGCG-------------CG-CCAUAGGG-----CCCUGa--GCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 44876 | 0.76 | 0.301599 |
Target: 5'- aGcCGCGCGcGUGUUCCGGGAUggCGUCc -3' miRNA: 3'- cCaGCGCGC-CAUAGGGCCCUGa-GCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 45151 | 0.69 | 0.680577 |
Target: 5'- uGG-CGCGCcaccaCCCGGGACUCGa- -3' miRNA: 3'- -CCaGCGCGccauaGGGCCCUGAGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 52043 | 0.67 | 0.766328 |
Target: 5'- gGGUgCGCGCGc--UCCUGGGGCgcgacUGUCg -3' miRNA: 3'- -CCA-GCGCGCcauAGGGCCCUGa----GCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 58283 | 0.66 | 0.858354 |
Target: 5'- gGGUC-CGUGagGUCCCGGGGCgCGa- -3' miRNA: 3'- -CCAGcGCGCcaUAGGGCCCUGaGCag -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 61332 | 0.67 | 0.793204 |
Target: 5'- cGG-CGgGCuugGGUGUCCCGG-AC-CGUCa -3' miRNA: 3'- -CCaGCgCG---CCAUAGGGCCcUGaGCAG- -5' |
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5462 | 3' | -58.6 | NC_001798.1 | + | 66867 | 0.66 | 0.827102 |
Target: 5'- aGUCGC-CGGgg-CgCCGGGGCUUGg- -3' miRNA: 3'- cCAGCGcGCCauaG-GGCCCUGAGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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