miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5462 5' -55.6 NC_001798.1 + 59862 0.68 0.814362
Target:  5'- gAGGAgGAGUCCUGGcugUGGucGGGCcgGCc -3'
miRNA:   3'- -UUCUgCUCAGGGCC---AUCu-CCCGuaUG- -5'
5462 5' -55.6 NC_001798.1 + 101845 0.68 0.796418
Target:  5'- gGAGGCGugGGUCCCGGcggcggcggaGGGGGGUggGCg -3'
miRNA:   3'- -UUCUGC--UCAGGGCCa---------UCUCCCGuaUG- -5'
5462 5' -55.6 NC_001798.1 + 149160 0.69 0.749059
Target:  5'- cGAGGCGccucggccGGUggUCCGGUGGGGGGCGg-- -3'
miRNA:   3'- -UUCUGC--------UCA--GGGCCAUCUCCCGUaug -5'
5462 5' -55.6 NC_001798.1 + 74855 0.69 0.739232
Target:  5'- --uGCGGGUCCUGGagguGGGGGCAgUGCc -3'
miRNA:   3'- uucUGCUCAGGGCCau--CUCCCGU-AUG- -5'
5462 5' -55.6 NC_001798.1 + 56401 0.73 0.524712
Target:  5'- cGGugGGGUCCCGcGgcGGGGGCuggugGCu -3'
miRNA:   3'- uUCugCUCAGGGC-CauCUCCCGua---UG- -5'
5462 5' -55.6 NC_001798.1 + 5910 0.74 0.485497
Target:  5'- cGAGGCGGG-CCCGGacGGGGGGCGgGCc -3'
miRNA:   3'- -UUCUGCUCaGGGCCa-UCUCCCGUaUG- -5'
5462 5' -55.6 NC_001798.1 + 23240 0.75 0.429472
Target:  5'- gGAGACGAcGUCCgCGGUccgcGGGGCGUACc -3'
miRNA:   3'- -UUCUGCU-CAGG-GCCAuc--UCCCGUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.