miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 3' -60.4 NC_001798.1 + 135652 0.66 0.73594
Target:  5'- cCGgGGCGUgguucuggaacUCCCGCGauGACACcGACUUc -3'
miRNA:   3'- -GCgCCGCGa----------AGGGCGC--CUGUG-CUGAA- -5'
5463 3' -60.4 NC_001798.1 + 95662 0.66 0.73594
Target:  5'- aCGCGGCGUcgUUCgGCGGuuugGCGGCg- -3'
miRNA:   3'- -GCGCCGCGa-AGGgCGCCug--UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 78825 0.66 0.73594
Target:  5'- cCGCGGCGaCggCCC-CGGccccugGCGCGGCa- -3'
miRNA:   3'- -GCGCCGC-GaaGGGcGCC------UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 66031 0.66 0.73594
Target:  5'- uGUGGCGCaUgCCGCGGgucGCcCGGCa- -3'
miRNA:   3'- gCGCCGCGaAgGGCGCC---UGuGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 148012 0.66 0.734989
Target:  5'- uGUGGCGCccgUCCCcuuccucuaccgcGUGGGCGCGGg-- -3'
miRNA:   3'- gCGCCGCGa--AGGG-------------CGCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 53242 0.66 0.73594
Target:  5'- gCGCGGcCGUgggcgUCCUGCGGcagcGCGcCGACg- -3'
miRNA:   3'- -GCGCC-GCGa----AGGGCGCC----UGU-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 91804 0.66 0.73594
Target:  5'- gCGCGGgGCguggggaCCGUGGGCGgGGCc- -3'
miRNA:   3'- -GCGCCgCGaag----GGCGCCUGUgCUGaa -5'
5463 3' -60.4 NC_001798.1 + 96350 0.66 0.73594
Target:  5'- uGCGGCGgcaCCUGCGGcCGgGGCUg -3'
miRNA:   3'- gCGCCGCgaaGGGCGCCuGUgCUGAa -5'
5463 3' -60.4 NC_001798.1 + 116508 0.66 0.73594
Target:  5'- uGcCGGC-CUUCUCGCGGGgGCGcuGCUg -3'
miRNA:   3'- gC-GCCGcGAAGGGCGCCUgUGC--UGAa -5'
5463 3' -60.4 NC_001798.1 + 109025 0.67 0.667808
Target:  5'- cCGCGGUGC-UCCC-CGGGCcucCGGCc- -3'
miRNA:   3'- -GCGCCGCGaAGGGcGCCUGu--GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 136 0.67 0.677688
Target:  5'- aGcCGGcCGCUccCCCGCGGGCGCcGCc- -3'
miRNA:   3'- gC-GCC-GCGAa-GGGCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 154474 0.67 0.677688
Target:  5'- aGcCGGcCGCUccCCCGCGGGCGCcGCc- -3'
miRNA:   3'- gC-GCC-GCGAa-GGGCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 36396 0.67 0.677688
Target:  5'- gCGCGGCGCcggggccccCCUGcCGGGCGgGGCg- -3'
miRNA:   3'- -GCGCCGCGaa-------GGGC-GCCUGUgCUGaa -5'
5463 3' -60.4 NC_001798.1 + 43854 0.67 0.677688
Target:  5'- uGCGGCGC-UCCacauacaGCGGAaacccaGCGGCc- -3'
miRNA:   3'- gCGCCGCGaAGGg------CGCCUg-----UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 116789 0.67 0.677688
Target:  5'- cCGCGGCGCccgaCGCGGGCGCcaacaccgcgucGACg- -3'
miRNA:   3'- -GCGCCGCGaaggGCGCCUGUG------------CUGaa -5'
5463 3' -60.4 NC_001798.1 + 113499 0.67 0.68655
Target:  5'- gGCGGCGCggCCCuGUgcgcccuGGugGCGGCc- -3'
miRNA:   3'- gCGCCGCGaaGGG-CG-------CCugUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 59720 0.67 0.687532
Target:  5'- gGUGGCGUcgUCCGCGGGgACaACUUc -3'
miRNA:   3'- gCGCCGCGaaGGGCGCCUgUGcUGAA- -5'
5463 3' -60.4 NC_001798.1 + 76954 0.67 0.687532
Target:  5'- gGCGGCGCUgcgggcggaCCUGUGGGgGCuGCUg -3'
miRNA:   3'- gCGCCGCGAa--------GGGCGCCUgUGcUGAa -5'
5463 3' -60.4 NC_001798.1 + 47670 0.67 0.687532
Target:  5'- cCGCGGCGCUggCCCGauG-CGCGcGCg- -3'
miRNA:   3'- -GCGCCGCGAa-GGGCgcCuGUGC-UGaa -5'
5463 3' -60.4 NC_001798.1 + 97441 0.67 0.667808
Target:  5'- aCGaggaGGCGCUgCgCCGCGugcuGGCGCGGCUg -3'
miRNA:   3'- -GCg---CCGCGAaG-GGCGC----CUGUGCUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.