miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 3' -60.4 NC_001798.1 + 48334 0.66 0.707084
Target:  5'- aCGCGGCGCaggaCGUcGACGCGACc- -3'
miRNA:   3'- -GCGCCGCGaaggGCGcCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 124257 0.66 0.707084
Target:  5'- cCGUGGaCGCgguuaUCCUGCGGcAgGCGACc- -3'
miRNA:   3'- -GCGCC-GCGa----AGGGCGCC-UgUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 127760 0.66 0.706111
Target:  5'- -cCGGCGCcaagcgcCCCGCGGACcccgcccGCGACc- -3'
miRNA:   3'- gcGCCGCGaa-----GGGCGCCUG-------UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 75281 0.66 0.704165
Target:  5'- uCGCGGCGCgcgaugccgcccuggCCCGCGaGGuggcCGCGugUUc -3'
miRNA:   3'- -GCGCCGCGaa-------------GGGCGC-CU----GUGCugAA- -5'
5463 3' -60.4 NC_001798.1 + 2112 0.66 0.70124
Target:  5'- -cCGGCGCggCCCGCGGccagguccucgcccgGCAgCGGCg- -3'
miRNA:   3'- gcGCCGCGaaGGGCGCC---------------UGU-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 27562 0.66 0.697334
Target:  5'- gGCGGCGC---CCGCGGGggaGCGGCc- -3'
miRNA:   3'- gCGCCGCGaagGGCGCCUg--UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 83856 0.66 0.697334
Target:  5'- gGCGGCGCUggcgggCCCGa-GGCgGCGACc- -3'
miRNA:   3'- gCGCCGCGAa-----GGGCgcCUG-UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 154055 0.66 0.697334
Target:  5'- gCGCGGCacgGCUggagCgCCG-GGGCGCGGCa- -3'
miRNA:   3'- -GCGCCG---CGAa---G-GGCgCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 31642 0.66 0.697334
Target:  5'- cCGUGGUGuCUgcgagCGCGGACGCGGCc- -3'
miRNA:   3'- -GCGCCGC-GAagg--GCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 59720 0.67 0.687532
Target:  5'- gGUGGCGUcgUCCGCGGGgACaACUUc -3'
miRNA:   3'- gCGCCGCGaaGGGCGCCUgUGcUGAA- -5'
5463 3' -60.4 NC_001798.1 + 76954 0.67 0.687532
Target:  5'- gGCGGCGCUgcgggcggaCCUGUGGGgGCuGCUg -3'
miRNA:   3'- gCGCCGCGAa--------GGGCGCCUgUGcUGAa -5'
5463 3' -60.4 NC_001798.1 + 47670 0.67 0.687532
Target:  5'- cCGCGGCGCUggCCCGauG-CGCGcGCg- -3'
miRNA:   3'- -GCGCCGCGAa-GGGCgcCuGUGC-UGaa -5'
5463 3' -60.4 NC_001798.1 + 80898 0.67 0.687532
Target:  5'- gGCGGCGCagcUCCCGCGccuguCGGCg- -3'
miRNA:   3'- gCGCCGCGa--AGGGCGCcugu-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 113499 0.67 0.68655
Target:  5'- gGCGGCGCggCCCuGUgcgcccuGGugGCGGCc- -3'
miRNA:   3'- gCGCCGCGaaGGG-CG-------CCugUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 136 0.67 0.677688
Target:  5'- aGcCGGcCGCUccCCCGCGGGCGCcGCc- -3'
miRNA:   3'- gC-GCC-GCGAa-GGGCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 154474 0.67 0.677688
Target:  5'- aGcCGGcCGCUccCCCGCGGGCGCcGCc- -3'
miRNA:   3'- gC-GCC-GCGAa-GGGCGCCUGUGcUGaa -5'
5463 3' -60.4 NC_001798.1 + 36396 0.67 0.677688
Target:  5'- gCGCGGCGCcggggccccCCUGcCGGGCGgGGCg- -3'
miRNA:   3'- -GCGCCGCGaa-------GGGC-GCCUGUgCUGaa -5'
5463 3' -60.4 NC_001798.1 + 43854 0.67 0.677688
Target:  5'- uGCGGCGC-UCCacauacaGCGGAaacccaGCGGCc- -3'
miRNA:   3'- gCGCCGCGaAGGg------CGCCUg-----UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 116789 0.67 0.677688
Target:  5'- cCGCGGCGCccgaCGCGGGCGCcaacaccgcgucGACg- -3'
miRNA:   3'- -GCGCCGCGaaggGCGCCUGUG------------CUGaa -5'
5463 3' -60.4 NC_001798.1 + 97441 0.67 0.667808
Target:  5'- aCGaggaGGCGCUgCgCCGCGugcuGGCGCGGCUg -3'
miRNA:   3'- -GCg---CCGCGAaG-GGCGC----CUGUGCUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.