miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 5' -51.8 NC_001798.1 + 4187 0.69 0.946667
Target:  5'- cGAGGgucccgcccgcggCGUGGUCUGcggcgcuggCGGGGGCGCg -3'
miRNA:   3'- uCUCCa------------GUACCAGAUa--------GCCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 31040 0.69 0.939244
Target:  5'- cGGGGGUCGggcgggGGUCgggCGGgggucGGGCACUa -3'
miRNA:   3'- -UCUCCAGUa-----CCAGauaGCC-----UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 78944 0.69 0.938759
Target:  5'- cGAGGUCuggGGUCgcUUuggccgcguccggGGGGGCGCCu -3'
miRNA:   3'- uCUCCAGua-CCAGauAG-------------CCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 15365 0.7 0.929074
Target:  5'- aGGGGGgaaucggcCGUGGgcgCgg-CGGAGGCGCCc -3'
miRNA:   3'- -UCUCCa-------GUACCa--GauaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 31550 0.7 0.929074
Target:  5'- gGGAGGUCugccacaGUC-GUCGGGGcGCGCCg -3'
miRNA:   3'- -UCUCCAGuac----CAGaUAGCCUC-UGUGG- -5'
5463 5' -51.8 NC_001798.1 + 16755 0.7 0.923616
Target:  5'- gGGGGGaUUAauUGGUC---CGGGGACACCc -3'
miRNA:   3'- -UCUCC-AGU--ACCAGauaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 15486 0.7 0.920221
Target:  5'- gGGGGGUCGUGGgggCUggugugguggggggcGUuuucgcugCGGAGGCGCUg -3'
miRNA:   3'- -UCUCCAGUACCa--GA---------------UA--------GCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 91548 0.7 0.911342
Target:  5'- cGGGGUUcgagagccaguguGUGGUgUccgCGGGGGCGCCg -3'
miRNA:   3'- uCUCCAG-------------UACCAgAua-GCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 4390 0.71 0.892609
Target:  5'- uGGuGGUgGUGGUggUGUCGGcgGGGCGCCg -3'
miRNA:   3'- -UCuCCAgUACCAg-AUAGCC--UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 39378 0.72 0.839385
Target:  5'- cGGGGUCgAUGGU--GUCGGcagaGGGCGCCu -3'
miRNA:   3'- uCUCCAG-UACCAgaUAGCC----UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 58534 0.73 0.776609
Target:  5'- cAGGGGUcCGUGGUCUGUUGGccgcucGGCGuCCu -3'
miRNA:   3'- -UCUCCA-GUACCAGAUAGCCu-----CUGU-GG- -5'
5463 5' -51.8 NC_001798.1 + 97542 0.76 0.665939
Target:  5'- cGGAGG-CGUGG-Cg--CGGGGACGCCc -3'
miRNA:   3'- -UCUCCaGUACCaGauaGCCUCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.