miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 42829 0.66 0.914766
Target:  5'- gGGcCGCGGgaAACAACAGCugaACCGCCg- -3'
miRNA:   3'- -UC-GCGCUgcUUGUUGUCG---UGGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 24795 0.66 0.914766
Target:  5'- uGCGCGACGcGCugguGCugauGCGCCugCgCGg -3'
miRNA:   3'- uCGCGCUGCuUGu---UGu---CGUGGugG-GU- -5'
5464 3' -55.6 NC_001798.1 + 25510 0.66 0.914766
Target:  5'- cGCGCGGCGGcCuggauGCGCCagguGCCCGa -3'
miRNA:   3'- uCGCGCUGCUuGuugu-CGUGG----UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 39255 0.66 0.914766
Target:  5'- -uCGCGGCGGGaAACGGCAucCCGCCa- -3'
miRNA:   3'- ucGCGCUGCUUgUUGUCGU--GGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 64917 0.66 0.914766
Target:  5'- cAGCGCGuuacuggucuucAUGGccGCgAGCAGCAUCACCUc -3'
miRNA:   3'- -UCGCGC------------UGCU--UG-UUGUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 66375 0.66 0.914766
Target:  5'- aGGCG-GGCGGACcGCcGCACCagggguuugaACCCGu -3'
miRNA:   3'- -UCGCgCUGCUUGuUGuCGUGG----------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 67114 0.66 0.914766
Target:  5'- cGCGgcccCGACGucCuucuCGGCGCCGCCCc -3'
miRNA:   3'- uCGC----GCUGCuuGuu--GUCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 109779 0.66 0.914766
Target:  5'- cGCGCGGCGAcccACGccgaucuccggGCcGCGCUAgCCAg -3'
miRNA:   3'- uCGCGCUGCU---UGU-----------UGuCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 28571 0.66 0.908771
Target:  5'- cGCGCGu---GCAGguGCGCCAUCUg -3'
miRNA:   3'- uCGCGCugcuUGUUguCGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 152043 0.66 0.908771
Target:  5'- gAGgGuCGGgGGGCGGC-GCACgGCCCAc -3'
miRNA:   3'- -UCgC-GCUgCUUGUUGuCGUGgUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 61203 0.66 0.908771
Target:  5'- cGGCGCG-CGc-CGGCGGUugCACCa- -3'
miRNA:   3'- -UCGCGCuGCuuGUUGUCGugGUGGgu -5'
5464 3' -55.6 NC_001798.1 + 76480 0.66 0.908771
Target:  5'- aGGCGCGGCGcagcucggggcuGGCcgaacuGCAGCGCUucgacGCCCu -3'
miRNA:   3'- -UCGCGCUGC------------UUGu-----UGUCGUGG-----UGGGu -5'
5464 3' -55.6 NC_001798.1 + 132152 0.66 0.908771
Target:  5'- gGGC-CGGCGGGCGG-GGCGCCcCCCc -3'
miRNA:   3'- -UCGcGCUGCUUGUUgUCGUGGuGGGu -5'
5464 3' -55.6 NC_001798.1 + 154043 0.66 0.908771
Target:  5'- gAGCGCGcCGGGgcGCGGCACgGCUgGa -3'
miRNA:   3'- -UCGCGCuGCUUguUGUCGUGgUGGgU- -5'
5464 3' -55.6 NC_001798.1 + 25343 0.66 0.908771
Target:  5'- gGGcCGUGGcCGAGCucACGG-ACCACCCGc -3'
miRNA:   3'- -UC-GCGCU-GCUUGu-UGUCgUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 112515 0.66 0.908158
Target:  5'- uGGCGCGaACGGGaccCGugGGUugcucucgcgcguGCCGCCCGc -3'
miRNA:   3'- -UCGCGC-UGCUU---GUugUCG-------------UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 97550 0.66 0.908158
Target:  5'- uGGCGCGgggacgcccGCGAGCGaggacggGgAGCGCgGCCCc -3'
miRNA:   3'- -UCGCGC---------UGCUUGU-------UgUCGUGgUGGGu -5'
5464 3' -55.6 NC_001798.1 + 142998 0.66 0.902537
Target:  5'- uGCGCGGCuugcGCGACcGaauaACCGCCCGc -3'
miRNA:   3'- uCGCGCUGcu--UGUUGuCg---UGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 135556 0.66 0.902537
Target:  5'- uGCGCGccguacuuuCGGcCAACGGCAUaCGCCCGc -3'
miRNA:   3'- uCGCGCu--------GCUuGUUGUCGUG-GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 108303 0.66 0.902537
Target:  5'- uGGCGCccccgGGCGAACucaaccugacuACGGCAUCcguGCCCAu -3'
miRNA:   3'- -UCGCG-----CUGCUUGu----------UGUCGUGG---UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.