miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 5' -58.7 NC_001798.1 + 128500 0.67 0.774185
Target:  5'- cUGCGGcuggacgCCCaGUCGUCGgCGGUGAu -3'
miRNA:   3'- -ACGCCcaaa---GGGgCAGUAGC-GCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 153287 0.67 0.774185
Target:  5'- cGCGGG--UCCgCCGUCuUCGUGGg-- -3'
miRNA:   3'- aCGCCCaaAGG-GGCAGuAGCGCCgcu -5'
5464 5' -58.7 NC_001798.1 + 25615 0.67 0.773273
Target:  5'- gGCGGGccccCCCCGgagugguccgccgagCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa-GGGGCagua-----------GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 15271 0.67 0.771445
Target:  5'- gGCGGug--CCCCGgguUCcgggcguggcggugGUCGCGGCGAc -3'
miRNA:   3'- aCGCCcaaaGGGGC---AG--------------UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 4155 0.67 0.765012
Target:  5'- cGCGGGcacccccgccUCCUCGUCGUcCGCGcCGAg -3'
miRNA:   3'- aCGCCCaa--------AGGGGCAGUA-GCGCcGCU- -5'
5464 5' -58.7 NC_001798.1 + 33798 0.67 0.755728
Target:  5'- cUGCGGGgagaCUCC--CAUCGgGGCGAg -3'
miRNA:   3'- -ACGCCCaaa-GGGGcaGUAGCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 32425 0.67 0.755728
Target:  5'- cGCGGGggUCUCgagCGUCGUGGCc- -3'
miRNA:   3'- aCGCCCaaAGGGgcaGUAGCGCCGcu -5'
5464 5' -58.7 NC_001798.1 + 43127 0.68 0.727285
Target:  5'- gGCGGGcgcgcgUCCCgCGUCA-CGCGGg-- -3'
miRNA:   3'- aCGCCCaa----AGGG-GCAGUaGCGCCgcu -5'
5464 5' -58.7 NC_001798.1 + 27527 0.68 0.707919
Target:  5'- cGCGGGaaggcagCCCCG-CGgcgCGCGGgGGg -3'
miRNA:   3'- aCGCCCaaa----GGGGCaGUa--GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 102042 0.68 0.707919
Target:  5'- gGCGGGggUCUCCGUgucugCGUGGgGGu -3'
miRNA:   3'- aCGCCCaaAGGGGCAgua--GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 39820 0.68 0.702058
Target:  5'- cGCGGGUggcggaucgucggcUCCCCG-CcgCGCugccgGGCGAg -3'
miRNA:   3'- aCGCCCAa-------------AGGGGCaGuaGCG-----CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 102618 0.68 0.69814
Target:  5'- gGCGGGgaUCcacaaauaacuCCCGUCGccggGCGGCGGa -3'
miRNA:   3'- aCGCCCaaAG-----------GGGCAGUag--CGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 81090 0.68 0.688309
Target:  5'- cGCGGGgga---CGUUcUCGCGGCGAg -3'
miRNA:   3'- aCGCCCaaagggGCAGuAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 27205 0.69 0.668521
Target:  5'- gGCGGGggaagcCCCCGgggCGgggCGCGGgGGa -3'
miRNA:   3'- aCGCCCaaa---GGGGCa--GUa--GCGCCgCU- -5'
5464 5' -58.7 NC_001798.1 + 52324 0.69 0.658581
Target:  5'- cUGCcccuGGGcagCCCCGggGUCGUGGCGGc -3'
miRNA:   3'- -ACG----CCCaaaGGGGCagUAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 147235 0.69 0.658581
Target:  5'- cGCGGGgg-CCCCGgggccccgggCcgCGCcGGCGGc -3'
miRNA:   3'- aCGCCCaaaGGGGCa---------GuaGCG-CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 83835 0.69 0.648621
Target:  5'- gGaCGGGccggUCCCCGUCcggGCGGCGc -3'
miRNA:   3'- aC-GCCCaa--AGGGGCAGuagCGCCGCu -5'
5464 5' -58.7 NC_001798.1 + 5594 0.69 0.628671
Target:  5'- gGCGaGGUcgCCCCGUUGgucCGCgGGCGGc -3'
miRNA:   3'- aCGC-CCAaaGGGGCAGUa--GCG-CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 150834 0.69 0.624681
Target:  5'- cGCGGGgcgccagggggCgCCgGUCggGUCGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa--------G-GGgCAG--UAGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 43033 0.7 0.618697
Target:  5'- cGCGGGg--CCCCGggcgCAaaUGCGGCGc -3'
miRNA:   3'- aCGCCCaaaGGGGCa---GUa-GCGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.