miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5465 3' -62.1 NC_001798.1 + 117555 0.66 0.645378
Target:  5'- uGGcugCGC-CCAGGUgCCGCGGcGCGc -3'
miRNA:   3'- gCCa--GCGaGGUUCGgGGCGCCaCGCc -5'
5465 3' -62.1 NC_001798.1 + 80992 0.66 0.642469
Target:  5'- cCGGUCGCggUCUugugggaagccccgGAGCCCCcCGGccccccugacgUGCGGu -3'
miRNA:   3'- -GCCAGCG--AGG--------------UUCGGGGcGCC-----------ACGCC- -5'
5465 3' -62.1 NC_001798.1 + 53942 0.67 0.635678
Target:  5'- aCGG--GCUCgAugcagugcauGGCCCUGCGGgcgGCGGu -3'
miRNA:   3'- -GCCagCGAGgU----------UCGGGGCGCCa--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 27166 0.67 0.635678
Target:  5'- gGGcUGCUgCGAGCUcggggCCGCGGgcGCGGg -3'
miRNA:   3'- gCCaGCGAgGUUCGG-----GGCGCCa-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 116773 0.67 0.635678
Target:  5'- aCGG-CGCUgCuguGCUCCGCGGcgcccgacGCGGg -3'
miRNA:   3'- -GCCaGCGAgGuu-CGGGGCGCCa-------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 82091 0.67 0.635678
Target:  5'- cCGG-CGcCUCaCGcGCCCCGCGGUcGCc- -3'
miRNA:   3'- -GCCaGC-GAG-GUuCGGGGCGCCA-CGcc -5'
5465 3' -62.1 NC_001798.1 + 36398 0.67 0.634708
Target:  5'- gCGG-CGC-CgGGGCCCCccugccgggcgggGCGGUGgGGc -3'
miRNA:   3'- -GCCaGCGaGgUUCGGGG-------------CGCCACgCC- -5'
5465 3' -62.1 NC_001798.1 + 44166 0.67 0.625006
Target:  5'- gCGGUaCGCccCCAGcacgcgcGCCUCGUGGUGCa- -3'
miRNA:   3'- -GCCA-GCGa-GGUU-------CGGGGCGCCACGcc -5'
5465 3' -62.1 NC_001798.1 + 59719 0.67 0.615309
Target:  5'- uGGUgGCgucgUCCGcggggacaacuucGGCCCCGgGGUGCc- -3'
miRNA:   3'- gCCAgCG----AGGU-------------UCGGGGCgCCACGcc -5'
5465 3' -62.1 NC_001798.1 + 25132 0.67 0.606591
Target:  5'- gCGGaCGCcCCccGCCCCGCGGccgccccucccGCGGg -3'
miRNA:   3'- -GCCaGCGaGGuuCGGGGCGCCa----------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 98583 0.67 0.606591
Target:  5'- gCGGUgGCgUCGgcGGCCCCGgCGGccccgGCGGc -3'
miRNA:   3'- -GCCAgCGaGGU--UCGGGGC-GCCa----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 97622 0.67 0.606591
Target:  5'- gGGcgacaUCGCgacgCGGGCCgCCGCGGacgUGCGGg -3'
miRNA:   3'- gCC-----AGCGag--GUUCGG-GGCGCC---ACGCC- -5'
5465 3' -62.1 NC_001798.1 + 108013 0.67 0.596921
Target:  5'- aGGgC-CUCCGauAGCCuCCGaGGUGCGGa -3'
miRNA:   3'- gCCaGcGAGGU--UCGG-GGCgCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 153088 0.67 0.587274
Target:  5'- gCGGg-GCggcgCCGGGCCCuCGCGGauauauacGCGGg -3'
miRNA:   3'- -GCCagCGa---GGUUCGGG-GCGCCa-------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 56087 0.67 0.587274
Target:  5'- aGG-CGUUUgGAGCCCaCGCGGcgUGCGc -3'
miRNA:   3'- gCCaGCGAGgUUCGGG-GCGCC--ACGCc -5'
5465 3' -62.1 NC_001798.1 + 52777 0.67 0.587274
Target:  5'- uCGG-CGCcCCGGGCgCCCGUGa-GCGGg -3'
miRNA:   3'- -GCCaGCGaGGUUCG-GGGCGCcaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 138735 0.68 0.568074
Target:  5'- cCGGcgCGCUCCGcGGCCCCgGCGaccGUGGc -3'
miRNA:   3'- -GCCa-GCGAGGU-UCGGGG-CGCca-CGCC- -5'
5465 3' -62.1 NC_001798.1 + 152382 0.68 0.568074
Target:  5'- cCGGgccgcCGCUCCGucgcucgcAGUgCCGgGGUGCGa -3'
miRNA:   3'- -GCCa----GCGAGGU--------UCGgGGCgCCACGCc -5'
5465 3' -62.1 NC_001798.1 + 142196 0.68 0.558532
Target:  5'- gGGUCGagcgcgCCAGgaccgccuGCCCCGCGGagGCGu -3'
miRNA:   3'- gCCAGCga----GGUU--------CGGGGCGCCa-CGCc -5'
5465 3' -62.1 NC_001798.1 + 3084 0.68 0.558532
Target:  5'- ---gCGcCUCCAGGaUCCCGCGGcagGCGGc -3'
miRNA:   3'- gccaGC-GAGGUUC-GGGGCGCCa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.