miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5465 5' -59.1 NC_001798.1 + 22740 0.66 0.783527
Target:  5'- gGGCCgcGGGGCCGAGGUcgcgauggcggacgaGGAcggGGGACg-- -3'
miRNA:   3'- -CCGG--UCUCGGCUCCA---------------CCU---CUCUGguu -5'
5465 5' -59.1 NC_001798.1 + 146500 0.66 0.777121
Target:  5'- gGGCCGGcaacgccccgcgccGGCCGcGGcGGAGAGAaCCc- -3'
miRNA:   3'- -CCGGUC--------------UCGGCuCCaCCUCUCU-GGuu -5'
5465 5' -59.1 NC_001798.1 + 14126 0.66 0.770654
Target:  5'- -aUCGGGGCgaUGGGGUGGGGgcaAGGCCAGa -3'
miRNA:   3'- ccGGUCUCG--GCUCCACCUC---UCUGGUU- -5'
5465 5' -59.1 NC_001798.1 + 102542 0.66 0.765064
Target:  5'- cGGCCGGcaGGCCGcacgcggucagcggcGGGUGGcGGGGCgCGGa -3'
miRNA:   3'- -CCGGUC--UCGGC---------------UCCACCuCUCUG-GUU- -5'
5465 5' -59.1 NC_001798.1 + 26528 0.66 0.761314
Target:  5'- gGGCggCGGcGUgGAGGUGGuGGGGACCGc -3'
miRNA:   3'- -CCG--GUCuCGgCUCCACC-UCUCUGGUu -5'
5465 5' -59.1 NC_001798.1 + 30045 0.66 0.761314
Target:  5'- aGCCcgAGAGCgGGGGacagggGGGGAGACgAGg -3'
miRNA:   3'- cCGG--UCUCGgCUCCa-----CCUCUCUGgUU- -5'
5465 5' -59.1 NC_001798.1 + 66775 0.66 0.761314
Target:  5'- cGGCguGGGCCGcGGaaucGGAGucGGCCGAc -3'
miRNA:   3'- -CCGguCUCGGCuCCa---CCUCu-CUGGUU- -5'
5465 5' -59.1 NC_001798.1 + 43011 0.66 0.761314
Target:  5'- cGGCCAG-GCCGcccGGGgGGAGcgcgGGGCCc- -3'
miRNA:   3'- -CCGGUCuCGGC---UCCaCCUC----UCUGGuu -5'
5465 5' -59.1 NC_001798.1 + 106980 0.66 0.761314
Target:  5'- cGGCCGGGGaggCGGcGGUGGuaauGACCAGc -3'
miRNA:   3'- -CCGGUCUCg--GCU-CCACCucu-CUGGUU- -5'
5465 5' -59.1 NC_001798.1 + 120556 0.66 0.751862
Target:  5'- gGGCCAucaGGCCGcuguuggugguGGUGGAGGGGCgGu -3'
miRNA:   3'- -CCGGUc--UCGGCu----------CCACCUCUCUGgUu -5'
5465 5' -59.1 NC_001798.1 + 10902 0.66 0.751862
Target:  5'- uGGCaGGAGCCGucGGUcGGGGcAGAUCGGa -3'
miRNA:   3'- -CCGgUCUCGGCu-CCA-CCUC-UCUGGUU- -5'
5465 5' -59.1 NC_001798.1 + 64358 0.66 0.751862
Target:  5'- cGGaCCAGGGUgGAGGcGGGGAGcgucCCGu -3'
miRNA:   3'- -CC-GGUCUCGgCUCCaCCUCUCu---GGUu -5'
5465 5' -59.1 NC_001798.1 + 34844 0.66 0.751862
Target:  5'- gGGCCGGAccGCCGGGcG-GGGGAcGCCu- -3'
miRNA:   3'- -CCGGUCU--CGGCUC-CaCCUCUcUGGuu -5'
5465 5' -59.1 NC_001798.1 + 97519 0.66 0.742306
Target:  5'- gGGCCGccGCgGAGGaGGGGGGGCgGAg -3'
miRNA:   3'- -CCGGUcuCGgCUCCaCCUCUCUGgUU- -5'
5465 5' -59.1 NC_001798.1 + 105813 0.66 0.742306
Target:  5'- uGGCCAGaAGCgGGGGaggggGGGGGGAaaGAa -3'
miRNA:   3'- -CCGGUC-UCGgCUCCa----CCUCUCUggUU- -5'
5465 5' -59.1 NC_001798.1 + 7799 0.66 0.742306
Target:  5'- uGGCgGGAGCCaGGGUcGGAcagGAGGCgCAGc -3'
miRNA:   3'- -CCGgUCUCGGcUCCA-CCU---CUCUG-GUU- -5'
5465 5' -59.1 NC_001798.1 + 67491 0.67 0.721945
Target:  5'- aGGCCgcGGGGCCGGGGggaucgcUGGAaAGcACCAu -3'
miRNA:   3'- -CCGG--UCUCGGCUCC-------ACCUcUC-UGGUu -5'
5465 5' -59.1 NC_001798.1 + 27581 0.67 0.713113
Target:  5'- cGGCCGGcuCCG-GG-GGAGGGACgGGg -3'
miRNA:   3'- -CCGGUCucGGCuCCaCCUCUCUGgUU- -5'
5465 5' -59.1 NC_001798.1 + 27144 0.67 0.713113
Target:  5'- aGGCaCGGGGCgCGGGaG-GGAGGGGCUg- -3'
miRNA:   3'- -CCG-GUCUCG-GCUC-CaCCUCUCUGGuu -5'
5465 5' -59.1 NC_001798.1 + 36155 0.67 0.703235
Target:  5'- cGGCgGcGGUCGGGGUGGGGGGAg--- -3'
miRNA:   3'- -CCGgUcUCGGCUCCACCUCUCUgguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.