Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5466 | 3' | -61 | NC_001798.1 | + | 52579 | 0.66 | 0.751694 |
Target: 5'- gCCGACacggugGUCgcgugCGUGGCCCUgGCCG-Cg -3' miRNA: 3'- -GGCUGaa----CAG-----GCGCCGGGGgUGGCuG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 77260 | 0.66 | 0.751694 |
Target: 5'- gUCGGCccUGggCGCGGCCgCCCGcgacCCGGCc -3' miRNA: 3'- -GGCUGa-ACagGCGCCGG-GGGU----GGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 80831 | 0.66 | 0.742462 |
Target: 5'- uCCGACaugagacgUGggCCGuCGGCCUCCuccacACCGAUc -3' miRNA: 3'- -GGCUGa-------ACa-GGC-GCCGGGGG-----UGGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 76171 | 0.66 | 0.742462 |
Target: 5'- aCGACUgucgGUUucaCGUGGCCUCgGCCG-Cg -3' miRNA: 3'- gGCUGAa---CAG---GCGCCGGGGgUGGCuG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 1144 | 0.66 | 0.742462 |
Target: 5'- cUCGGCggcgUGgccagccCCGCGGCgguCCCCACCa-- -3' miRNA: 3'- -GGCUGa---ACa------GGCGCCG---GGGGUGGcug -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 75466 | 0.66 | 0.742462 |
Target: 5'- gCCGGCccggCCGCGGCCCUgcUgGACu -3' miRNA: 3'- -GGCUGaacaGGCGCCGGGGguGgCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 48390 | 0.66 | 0.742462 |
Target: 5'- gCCGcCgcGaCCGCacgGGCCCCCGCCcGCu -3' miRNA: 3'- -GGCuGaaCaGGCG---CCGGGGGUGGcUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 57044 | 0.66 | 0.742462 |
Target: 5'- gCgGACgggcgGUCCGUccGGCCCCaCACCc-- -3' miRNA: 3'- -GgCUGaa---CAGGCG--CCGGGG-GUGGcug -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 26415 | 0.67 | 0.685509 |
Target: 5'- cCCGACggcgaCGC-GCCCCCGCUGGu -3' miRNA: 3'- -GGCUGaacagGCGcCGGGGGUGGCUg -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 23338 | 0.67 | 0.685509 |
Target: 5'- aCCGcCgccggCGCGcCCCCCGCCGGCg -3' miRNA: 3'- -GGCuGaacagGCGCcGGGGGUGGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 82205 | 0.67 | 0.685509 |
Target: 5'- gCCGcCUUcUCCGgGccuuGCCCCC-CCGACc -3' miRNA: 3'- -GGCuGAAcAGGCgC----CGGGGGuGGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 154108 | 0.67 | 0.685509 |
Target: 5'- gCCGGCg---CCGgGGaCCCCGgCGGCg -3' miRNA: 3'- -GGCUGaacaGGCgCCgGGGGUgGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 73201 | 0.67 | 0.684543 |
Target: 5'- aCCGACggcgUGuUUCGCgccucggcguuucGGCCuUCCGCCGGCc -3' miRNA: 3'- -GGCUGa---AC-AGGCG-------------CCGG-GGGUGGCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 48348 | 0.67 | 0.685509 |
Target: 5'- gUCGACgcGaCCGCGGCCgCCCgggGCCGcCc -3' miRNA: 3'- -GGCUGaaCaGGCGCCGG-GGG---UGGCuG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 87745 | 0.67 | 0.685509 |
Target: 5'- cCCGAacc--CCGCGGCCCugagCCGCgCGGCc -3' miRNA: 3'- -GGCUgaacaGGCGCCGGG----GGUG-GCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 23725 | 0.67 | 0.69226 |
Target: 5'- cCCGGCggGUCgagcuggacgccgaCGCGGCCUCCGgCGcCu -3' miRNA: 3'- -GGCUGaaCAG--------------GCGCCGGGGGUgGCuG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 73908 | 0.67 | 0.695147 |
Target: 5'- gCGACgugcUGUCCGCGGaggCCAUCGAg -3' miRNA: 3'- gGCUGa---ACAGGCGCCgggGGUGGCUg -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 139057 | 0.67 | 0.695147 |
Target: 5'- gCGGCUggaggCCGCGGgCCaCCACgUGGCg -3' miRNA: 3'- gGCUGAaca--GGCGCCgGG-GGUG-GCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 146617 | 0.67 | 0.695147 |
Target: 5'- aCGcCUcccgCCGCauuaGGCCCCCGCgGGCa -3' miRNA: 3'- gGCuGAaca-GGCG----CCGGGGGUGgCUG- -5' |
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5466 | 3' | -61 | NC_001798.1 | + | 87490 | 0.67 | 0.682609 |
Target: 5'- aCCGGCUcaucgaucggaugcUGaCCGCGuGCCCCggcUACCGGu -3' miRNA: 3'- -GGCUGA--------------ACaGGCGC-CGGGG---GUGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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