miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 21660 0.66 0.723744
Target:  5'- gCCGGCgucucUGUCUcgcuGUGGCCCCCuuCgCGAUn -3'
miRNA:   3'- -GGCUGa----ACAGG----CGCCGGGGGu-G-GCUG- -5'
5466 3' -61 NC_001798.1 + 127961 0.66 0.714273
Target:  5'- cCCGGCccgcGUCCcCGGCCCUCuCUGAg -3'
miRNA:   3'- -GGCUGaa--CAGGcGCCGGGGGuGGCUg -5'
5466 3' -61 NC_001798.1 + 62334 0.66 0.714273
Target:  5'- aCG-CUga-CCGCGGCCCCgGUCGGCc -3'
miRNA:   3'- gGCuGAacaGGCGCCGGGGgUGGCUG- -5'
5466 3' -61 NC_001798.1 + 66801 0.66 0.714273
Target:  5'- gCCGACgcgcgcggGUCCGUcgcggagcccGGCCCgguGCCGGCg -3'
miRNA:   3'- -GGCUGaa------CAGGCG----------CCGGGgg-UGGCUG- -5'
5466 3' -61 NC_001798.1 + 54664 0.66 0.714273
Target:  5'- gCCGGCag--CCGCGGCgCgCCCGCUcGCg -3'
miRNA:   3'- -GGCUGaacaGGCGCCG-G-GGGUGGcUG- -5'
5466 3' -61 NC_001798.1 + 1663 0.66 0.704738
Target:  5'- -aGGCgcgcGUgCGCGGCCUCCACgCGcGCg -3'
miRNA:   3'- ggCUGaa--CAgGCGCCGGGGGUG-GC-UG- -5'
5466 3' -61 NC_001798.1 + 109064 0.66 0.704738
Target:  5'- gCGuCuUUGUCCugGgGGCCccgacgCCCGCCGACa -3'
miRNA:   3'- gGCuG-AACAGG--CgCCGG------GGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 150695 0.66 0.704738
Target:  5'- cCCGcGCgccUG-CgCGCGcCCCCCGCCGGCc -3'
miRNA:   3'- -GGC-UGa--ACaG-GCGCcGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 98363 0.67 0.69899
Target:  5'- uCCGAC-UGUCCGCugguGGCCaucgucgagagcggCC-CCGACg -3'
miRNA:   3'- -GGCUGaACAGGCG----CCGGg-------------GGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 73908 0.67 0.695147
Target:  5'- gCGACgugcUGUCCGCGGaggCCAUCGAg -3'
miRNA:   3'- gGCUGa---ACAGGCGCCgggGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 139057 0.67 0.695147
Target:  5'- gCGGCUggaggCCGCGGgCCaCCACgUGGCg -3'
miRNA:   3'- gGCUGAaca--GGCGCCgGG-GGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 146617 0.67 0.695147
Target:  5'- aCGcCUcccgCCGCauuaGGCCCCCGCgGGCa -3'
miRNA:   3'- gGCuGAaca-GGCG----CCGGGGGUGgCUG- -5'
5466 3' -61 NC_001798.1 + 23725 0.67 0.69226
Target:  5'- cCCGGCggGUCgagcuggacgccgaCGCGGCCUCCGgCGcCu -3'
miRNA:   3'- -GGCUGaaCAG--------------GCGCCGGGGGUgGCuG- -5'
5466 3' -61 NC_001798.1 + 154108 0.67 0.685509
Target:  5'- gCCGGCg---CCGgGGaCCCCGgCGGCg -3'
miRNA:   3'- -GGCUGaacaGGCgCCgGGGGUgGCUG- -5'
5466 3' -61 NC_001798.1 + 82205 0.67 0.685509
Target:  5'- gCCGcCUUcUCCGgGccuuGCCCCC-CCGACc -3'
miRNA:   3'- -GGCuGAAcAGGCgC----CGGGGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 23338 0.67 0.685509
Target:  5'- aCCGcCgccggCGCGcCCCCCGCCGGCg -3'
miRNA:   3'- -GGCuGaacagGCGCcGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 26415 0.67 0.685509
Target:  5'- cCCGACggcgaCGC-GCCCCCGCUGGu -3'
miRNA:   3'- -GGCUGaacagGCGcCGGGGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 48348 0.67 0.685509
Target:  5'- gUCGACgcGaCCGCGGCCgCCCgggGCCGcCc -3'
miRNA:   3'- -GGCUGaaCaGGCGCCGG-GGG---UGGCuG- -5'
5466 3' -61 NC_001798.1 + 87745 0.67 0.685509
Target:  5'- cCCGAacc--CCGCGGCCCugagCCGCgCGGCc -3'
miRNA:   3'- -GGCUgaacaGGCGCCGGG----GGUG-GCUG- -5'
5466 3' -61 NC_001798.1 + 73201 0.67 0.684543
Target:  5'- aCCGACggcgUGuUUCGCgccucggcguuucGGCCuUCCGCCGGCc -3'
miRNA:   3'- -GGCUGa---AC-AGGCG-------------CCGG-GGGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.