miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 5' -56.5 NC_001798.1 + 76900 0.66 0.878111
Target:  5'- -cGCGGGGUGGaccgaccUGGCCgAUGC-CGUc- -3'
miRNA:   3'- gaCGUCCUACC-------ACCGG-UACGuGCAca -5'
5466 5' -56.5 NC_001798.1 + 36082 0.66 0.871544
Target:  5'- -cGCGGGGUaGGUGGgUggGCGgGUGg -3'
miRNA:   3'- gaCGUCCUA-CCACCgGuaCGUgCACa -5'
5466 5' -56.5 NC_001798.1 + 34087 0.66 0.871544
Target:  5'- uUGgGGGggGGUGaCCG-GCGCGUGg -3'
miRNA:   3'- gACgUCCuaCCACcGGUaCGUGCACa -5'
5466 5' -56.5 NC_001798.1 + 56415 0.66 0.856324
Target:  5'- -gGCGGGGgcUGGUGGCU--GC-CGUGg -3'
miRNA:   3'- gaCGUCCU--ACCACCGGuaCGuGCACa -5'
5466 5' -56.5 NC_001798.1 + 86319 0.66 0.848402
Target:  5'- gUGCGGGccuacUGGcUGGCCAUGCgACGccUGa -3'
miRNA:   3'- gACGUCCu----ACC-ACCGGUACG-UGC--ACa -5'
5466 5' -56.5 NC_001798.1 + 137829 0.67 0.823466
Target:  5'- gUGCuGGAaacUGuUGGCCAcGUACGUGUc -3'
miRNA:   3'- gACGuCCU---ACcACCGGUaCGUGCACA- -5'
5466 5' -56.5 NC_001798.1 + 102029 0.67 0.81479
Target:  5'- -aGCGGGGUGGuUGGgcgggggucuCCGUGUcuGCGUGg -3'
miRNA:   3'- gaCGUCCUACC-ACC----------GGUACG--UGCACa -5'
5466 5' -56.5 NC_001798.1 + 44999 0.67 0.796941
Target:  5'- gCUGCAGGAggcccuggcGGUGGUCaAUGCGCu--- -3'
miRNA:   3'- -GACGUCCUa--------CCACCGG-UACGUGcaca -5'
5466 5' -56.5 NC_001798.1 + 86008 0.67 0.796941
Target:  5'- -cGCAGGggGGUGaGCCGgagACGUGg -3'
miRNA:   3'- gaCGUCCuaCCAC-CGGUacgUGCACa -5'
5466 5' -56.5 NC_001798.1 + 9678 0.68 0.778486
Target:  5'- -cGCGGGAUGGggGGCUcu-CACGUGc -3'
miRNA:   3'- gaCGUCCUACCa-CCGGuacGUGCACa -5'
5466 5' -56.5 NC_001798.1 + 42342 0.69 0.73018
Target:  5'- -cGCAGGcu-GUGGCCGUGgGCGUa- -3'
miRNA:   3'- gaCGUCCuacCACCGGUACgUGCAca -5'
5466 5' -56.5 NC_001798.1 + 78561 0.69 0.720223
Target:  5'- cCUGCGGGA-GGcgcUGGCCGcGCGCGa-- -3'
miRNA:   3'- -GACGUCCUaCC---ACCGGUaCGUGCaca -5'
5466 5' -56.5 NC_001798.1 + 113308 0.69 0.710188
Target:  5'- -cGCuGGAgcUGGUGGCCGcggGCAUGUa- -3'
miRNA:   3'- gaCGuCCU--ACCACCGGUa--CGUGCAca -5'
5466 5' -56.5 NC_001798.1 + 56931 0.73 0.458925
Target:  5'- -aGUAGG-UGGcGGCCGUGCACGUc- -3'
miRNA:   3'- gaCGUCCuACCaCCGGUACGUGCAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.