miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5467 5' -58.8 NC_001798.1 + 134195 0.66 0.83105
Target:  5'- cCCCGGCCGCcuccccgcuGgAGCcccugggggacccgACCCUGuGGCGGGc -3'
miRNA:   3'- -GGGUUGGCG---------UgUCG--------------UGGGGC-UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 150797 0.66 0.830237
Target:  5'- cCCCGcCCGCAacggGGCGCCgCCGcugcugcugcuccGCGGGg -3'
miRNA:   3'- -GGGUuGGCGUg---UCGUGG-GGCu------------CGUCC- -5'
5467 5' -58.8 NC_001798.1 + 153945 0.66 0.825324
Target:  5'- aCCAGCaGC-CAGCGCCgCagGAGCgAGGa -3'
miRNA:   3'- gGGUUGgCGuGUCGUGG-Gg-CUCG-UCC- -5'
5467 5' -58.8 NC_001798.1 + 75223 0.66 0.825324
Target:  5'- gCCGACCugGCGCAGCugUUCGAGg--- -3'
miRNA:   3'- gGGUUGG--CGUGUCGugGGGCUCgucc -5'
5467 5' -58.8 NC_001798.1 + 35402 0.66 0.825324
Target:  5'- gCCGGCCGC-CGGaUGCCCgCGggggccuaaugcGGCGGGa -3'
miRNA:   3'- gGGUUGGCGuGUC-GUGGG-GC------------UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 26113 0.66 0.825324
Target:  5'- aCCgCGugCGCACGcGCuucgGCCCCGAcacGCuGGu -3'
miRNA:   3'- -GG-GUugGCGUGU-CG----UGGGGCU---CGuCC- -5'
5467 5' -58.8 NC_001798.1 + 4690 0.66 0.825324
Target:  5'- gCCAGCUGcCGCGGCgagacgacGCCguCCGcGGCAGGc -3'
miRNA:   3'- gGGUUGGC-GUGUCG--------UGG--GGC-UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 86852 0.66 0.825324
Target:  5'- gCCCGGCCGCgACAagACCCgGcGGCGGu -3'
miRNA:   3'- -GGGUUGGCG-UGUcgUGGGgC-UCGUCc -5'
5467 5' -58.8 NC_001798.1 + 133576 0.66 0.8245
Target:  5'- gCCAAgaGCAC-GCAgacguuuCCCgGGGCGGGg -3'
miRNA:   3'- gGGUUggCGUGuCGU-------GGGgCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 1285 0.66 0.8245
Target:  5'- aCCAgcgggggcgcgucGCCGUcgggcucgaGCAGCGCCCgCGcGCAGa -3'
miRNA:   3'- gGGU-------------UGGCG---------UGUCGUGGG-GCuCGUCc -5'
5467 5' -58.8 NC_001798.1 + 93086 0.66 0.820352
Target:  5'- cCCCAGCggggCGCGCgcgacgccgggaacaAGgGCCCggCGGGCGGGu -3'
miRNA:   3'- -GGGUUG----GCGUG---------------UCgUGGG--GCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 90444 0.66 0.817005
Target:  5'- aCCAGCCGaa-GGUgacaaACCCCGGGUuguccAGGa -3'
miRNA:   3'- gGGUUGGCgugUCG-----UGGGGCUCG-----UCC- -5'
5467 5' -58.8 NC_001798.1 + 143768 0.66 0.817005
Target:  5'- gCCUGAUCGCGUucugggcaugGGCGCCCCaGAGCAu- -3'
miRNA:   3'- -GGGUUGGCGUG----------UCGUGGGG-CUCGUcc -5'
5467 5' -58.8 NC_001798.1 + 19183 0.66 0.817005
Target:  5'- gCCCGAUCGguUu-UugCCCGAGCGGa -3'
miRNA:   3'- -GGGUUGGCguGucGugGGGCUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 26359 0.66 0.817005
Target:  5'- gCCCGgcggaGCUGCGCGG-GCCgCG-GCGGGa -3'
miRNA:   3'- -GGGU-----UGGCGUGUCgUGGgGCuCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 69882 0.66 0.817005
Target:  5'- uCCCAcCCG-ACAGCA-CCCGGGCc-- -3'
miRNA:   3'- -GGGUuGGCgUGUCGUgGGGCUCGucc -5'
5467 5' -58.8 NC_001798.1 + 29099 0.66 0.817005
Target:  5'- uCCCGGCCGC-CAu--CCCCGcGCAuGGu -3'
miRNA:   3'- -GGGUUGGCGuGUcguGGGGCuCGU-CC- -5'
5467 5' -58.8 NC_001798.1 + 122625 0.66 0.817005
Target:  5'- uCCgGGCCGCGCuccaaGGCGgCCCGcGCAu- -3'
miRNA:   3'- -GGgUUGGCGUG-----UCGUgGGGCuCGUcc -5'
5467 5' -58.8 NC_001798.1 + 132137 0.66 0.817005
Target:  5'- gCCCugcGCCGC-CGGgGgCCggCGGGCGGGg -3'
miRNA:   3'- -GGGu--UGGCGuGUCgUgGG--GCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 28079 0.66 0.816164
Target:  5'- gCCGGCCGCguccucgcuccuGCGGCgcuggcugcugguGCCCCaGGCGGa -3'
miRNA:   3'- gGGUUGGCG------------UGUCG-------------UGGGGcUCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.