miRNA display CGI


Results 21 - 40 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5468 3' -58.8 NC_001798.1 + 25881 0.66 0.77395
Target:  5'- cUGGCCCGCCgacggGCCCGuggucucGcGGCaGCACg -3'
miRNA:   3'- cACUGGGUGG-----UGGGCuuu----C-CCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 35473 0.66 0.77395
Target:  5'- cUGGCCCGCgGCCCGucugcuGGCcCGCg -3'
miRNA:   3'- cACUGGGUGgUGGGCuuuc--CCGcGUG- -5'
5468 3' -58.8 NC_001798.1 + 86330 0.66 0.77395
Target:  5'- cUGGCUgGCCAUgCGAcgccuGAGGGCGUcCg -3'
miRNA:   3'- cACUGGgUGGUGgGCU-----UUCCCGCGuG- -5'
5468 3' -58.8 NC_001798.1 + 111754 0.66 0.77395
Target:  5'- -cGGCCCcggucccgGCCAUCgGuuGGGGGCGCGg -3'
miRNA:   3'- caCUGGG--------UGGUGGgCu-UUCCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 135229 0.66 0.77395
Target:  5'- -aGGCCgGgCugCCGGAagcccgGGGGCGgGCg -3'
miRNA:   3'- caCUGGgUgGugGGCUU------UCCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 137437 0.66 0.77395
Target:  5'- -gGACCCGC--CCCGc-GGGGaCGCGCu -3'
miRNA:   3'- caCUGGGUGguGGGCuuUCCC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 150175 0.66 0.772103
Target:  5'- -cGGgCCGCCGCCCccuccgcggcguGGGGGGCgGCACc -3'
miRNA:   3'- caCUgGGUGGUGGGc-----------UUUCCCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 64073 0.66 0.764665
Target:  5'- -aGAagUACCGCUCGggGGuGGgGCACa -3'
miRNA:   3'- caCUggGUGGUGGGCuuUC-CCgCGUG- -5'
5468 3' -58.8 NC_001798.1 + 92530 0.66 0.764665
Target:  5'- -aGGCCC-CCaACCUGAcgcggcucugcgAGcGGGCGCGCc -3'
miRNA:   3'- caCUGGGuGG-UGGGCU------------UU-CCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 51945 0.66 0.764665
Target:  5'- -cGugCCGCUGCUCagcgcgGGAGGGGcCGCGCc -3'
miRNA:   3'- caCugGGUGGUGGG------CUUUCCC-GCGUG- -5'
5468 3' -58.8 NC_001798.1 + 93762 0.66 0.764665
Target:  5'- -gGGCCCGCCACCCcaaguucgcGAGcgccgcccGGGGgGC-Ca -3'
miRNA:   3'- caCUGGGUGGUGGG---------CUU--------UCCCgCGuG- -5'
5468 3' -58.8 NC_001798.1 + 112747 0.66 0.764665
Target:  5'- cUGACuaaCCGCCacgucaucaGCCCGcggGGAGGGCGgACg -3'
miRNA:   3'- cACUG---GGUGG---------UGGGC---UUUCCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 121954 0.66 0.764665
Target:  5'- cGUcACCCgccGCCACCCGGucc-GCGCGCg -3'
miRNA:   3'- -CAcUGGG---UGGUGGGCUuuccCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 121105 0.66 0.764665
Target:  5'- --cACCCACgccccuuccggCACCgGGAAGGGCucGCACc -3'
miRNA:   3'- cacUGGGUG-----------GUGGgCUUUCCCG--CGUG- -5'
5468 3' -58.8 NC_001798.1 + 54795 0.66 0.764665
Target:  5'- aUGACgCCGCCauGCCCGc--GGGCGUcggGCu -3'
miRNA:   3'- cACUG-GGUGG--UGGGCuuuCCCGCG---UG- -5'
5468 3' -58.8 NC_001798.1 + 54008 0.66 0.76373
Target:  5'- cUGGCCCACCugUgGGAgaccggcaagcgcAGcGGCgGCACg -3'
miRNA:   3'- cACUGGGUGGugGgCUU-------------UC-CCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 86117 0.67 0.759038
Target:  5'- --cGCCCGCCGCgCCGcggucagcgaguccuGGgaagcgcaccgcGGGGCGCGCa -3'
miRNA:   3'- cacUGGGUGGUG-GGC---------------UU------------UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 27477 0.67 0.755265
Target:  5'- -cGuCCUGCCGCgCGggGgcGGGCGCGg -3'
miRNA:   3'- caCuGGGUGGUGgGCuuU--CCCGCGUg -5'
5468 3' -58.8 NC_001798.1 + 117772 0.67 0.755265
Target:  5'- -cGGCCacgGCCaACCCGu--GGGCGuCGCa -3'
miRNA:   3'- caCUGGg--UGG-UGGGCuuuCCCGC-GUG- -5'
5468 3' -58.8 NC_001798.1 + 73699 0.67 0.755265
Target:  5'- -cGGCCCAuaaacaggccCCGCUCGuggcGGGCGCGg -3'
miRNA:   3'- caCUGGGU----------GGUGGGCuuu-CCCGCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.