miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5469 3' -51.8 NC_001798.1 + 89533 0.66 0.987647
Target:  5'- -gGAUCUGCuGGCCGUcguAGAUg-- -3'
miRNA:   3'- ugCUAGACGuCCGGCAcuuUCUGuag -5'
5469 3' -51.8 NC_001798.1 + 43318 0.66 0.986002
Target:  5'- gACGAUUccGCAGGUC-UGggGGGCGg- -3'
miRNA:   3'- -UGCUAGa-CGUCCGGcACuuUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 4206 0.66 0.985829
Target:  5'- gUGGUCUGCGGcGCUGgcgGggGcgcgggcGGCGUCg -3'
miRNA:   3'- uGCUAGACGUC-CGGCa--CuuU-------CUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 153536 0.66 0.982215
Target:  5'- gGCG-UCaGgGGGUCG-GAGGGGCGUCa -3'
miRNA:   3'- -UGCuAGaCgUCCGGCaCUUUCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 153574 0.66 0.982215
Target:  5'- gGCG-UCaGgGGGUCG-GAGGGGCGUCa -3'
miRNA:   3'- -UGCuAGaCgUCCGGCaCUUUCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 153612 0.66 0.982215
Target:  5'- gGCG-UCaGgGGGUCG-GAGGGGCGUCa -3'
miRNA:   3'- -UGCuAGaCgUCCGGCaCUUUCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 79132 0.67 0.969437
Target:  5'- aGCGcgC-GgAGGCCGUGGAGGagcugggcgcgcGCGUCa -3'
miRNA:   3'- -UGCuaGaCgUCCGGCACUUUC------------UGUAG- -5'
5469 3' -51.8 NC_001798.1 + 41473 0.67 0.966249
Target:  5'- gGCGGUCgGCGGGCCcaGAAAcaacaGCGUCu -3'
miRNA:   3'- -UGCUAGaCGUCCGGcaCUUUc----UGUAG- -5'
5469 3' -51.8 NC_001798.1 + 125477 0.67 0.966249
Target:  5'- cACGGUCUGguGGCgcuu--GGGCGUCg -3'
miRNA:   3'- -UGCUAGACguCCGgcacuuUCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 122596 0.67 0.966249
Target:  5'- cGCGuGUCUGCGGGCCcUGGGccacucuauccGGGCcgCg -3'
miRNA:   3'- -UGC-UAGACGUCCGGcACUU-----------UCUGuaG- -5'
5469 3' -51.8 NC_001798.1 + 120048 0.67 0.962834
Target:  5'- uCGGUCUGCAGGCgcacCGUcacGGAGACGa- -3'
miRNA:   3'- uGCUAGACGUCCG----GCAc--UUUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 40489 0.67 0.962479
Target:  5'- gACGAgcCUGCcugugcuGGGCCGgggGAGGGGCAa- -3'
miRNA:   3'- -UGCUa-GACG-------UCCGGCa--CUUUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 71898 0.68 0.959184
Target:  5'- -aGAUCcGCuucccGGCCcUGGAGGGCAUCc -3'
miRNA:   3'- ugCUAGaCGu----CCGGcACUUUCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 67683 0.68 0.955296
Target:  5'- cGCGAUgaacggaaacagCgGCGGGcCCGUGGGAGGCGg- -3'
miRNA:   3'- -UGCUA------------GaCGUCC-GGCACUUUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 90846 0.69 0.926729
Target:  5'- gACGGUCccgGCGGG-CGUGAu-GGCGUCc -3'
miRNA:   3'- -UGCUAGa--CGUCCgGCACUuuCUGUAG- -5'
5469 3' -51.8 NC_001798.1 + 28583 0.71 0.858914
Target:  5'- uGCGccAUCUGguGGCC-UGGGAGACGg- -3'
miRNA:   3'- -UGC--UAGACguCCGGcACUUUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 69177 0.71 0.850831
Target:  5'- cCGAUg-GCGGGCCagGUGggGGAgGUCg -3'
miRNA:   3'- uGCUAgaCGUCCGG--CACuuUCUgUAG- -5'
5469 3' -51.8 NC_001798.1 + 108114 0.72 0.816444
Target:  5'- cCGGUCUGUGGGUgGUGAuGGGgGUCc -3'
miRNA:   3'- uGCUAGACGUCCGgCACUuUCUgUAG- -5'
5469 3' -51.8 NC_001798.1 + 65954 0.75 0.666987
Target:  5'- cACGAUCUGguGGUCGU-AGAGGCGg- -3'
miRNA:   3'- -UGCUAGACguCCGGCAcUUUCUGUag -5'
5469 3' -51.8 NC_001798.1 + 8849 0.76 0.613963
Target:  5'- uUGGUCgGCGGGCCG-GGAGGuCAUCg -3'
miRNA:   3'- uGCUAGaCGUCCGGCaCUUUCuGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.