miRNA display CGI


Results 1 - 20 of 446 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5469 5' -60.6 NC_001798.1 + 149084 0.66 0.761116
Target:  5'- cCGUccccccCCCCCACu-CCCAC-CCCCa -3'
miRNA:   3'- uGCGuua---GGGGGUGcuGGGUGcGGGG- -5'
5469 5' -60.6 NC_001798.1 + 81904 0.66 0.761116
Target:  5'- cUGCuuugCCCCUuccgccCGGCCC-CGCCUCg -3'
miRNA:   3'- uGCGuua-GGGGGu-----GCUGGGuGCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 130437 0.66 0.761116
Target:  5'- gACGCGGacUCCCgUCugGGCCCcCGgCCa -3'
miRNA:   3'- -UGCGUU--AGGG-GGugCUGGGuGCgGGg -5'
5469 5' -60.6 NC_001798.1 + 38466 0.66 0.761116
Target:  5'- uCGCccUCCuCCCACGcgcacGCCgGCaucGCCCCg -3'
miRNA:   3'- uGCGuuAGG-GGGUGC-----UGGgUG---CGGGG- -5'
5469 5' -60.6 NC_001798.1 + 53907 0.66 0.761116
Target:  5'- uUGCGcgCCaCCugGACCgCGgGCCCa -3'
miRNA:   3'- uGCGUuaGGgGGugCUGG-GUgCGGGg -5'
5469 5' -60.6 NC_001798.1 + 57157 0.66 0.761116
Target:  5'- cCGCGGgcuggCgCCCG-GGCCgGCGCCCUc -3'
miRNA:   3'- uGCGUUa----GgGGGUgCUGGgUGCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 99495 0.66 0.761116
Target:  5'- cGCGCGAcCUCaCCACGaagGCCCGgGCCa- -3'
miRNA:   3'- -UGCGUUaGGG-GGUGC---UGGGUgCGGgg -5'
5469 5' -60.6 NC_001798.1 + 59007 0.66 0.761116
Target:  5'- gGCGCGGaggaaCCCCAggccggugcuccCGAUCacgaACGCCCCc -3'
miRNA:   3'- -UGCGUUag---GGGGU------------GCUGGg---UGCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 48783 0.66 0.7602
Target:  5'- gACGCAcggcaCCCCCgGCGAuuCCCuucgcgaGgGCCCCg -3'
miRNA:   3'- -UGCGUua---GGGGG-UGCU--GGG-------UgCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 19472 0.66 0.751915
Target:  5'- gACGaugaCCCCCA-GAacCCCGgGCCCCc -3'
miRNA:   3'- -UGCguuaGGGGGUgCU--GGGUgCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 23347 0.66 0.751915
Target:  5'- gGCGCg--CCCCC-CG-CCgGCGCUCg -3'
miRNA:   3'- -UGCGuuaGGGGGuGCuGGgUGCGGGg -5'
5469 5' -60.6 NC_001798.1 + 49322 0.66 0.751915
Target:  5'- gACGUGgcGUUCCCCACccuGCCCGC-CaCCCg -3'
miRNA:   3'- -UGCGU--UAGGGGGUGc--UGGGUGcG-GGG- -5'
5469 5' -60.6 NC_001798.1 + 125532 0.66 0.751915
Target:  5'- aGCGCAucgCCgCCGagcgucaGGCCCgccgACGCCUCg -3'
miRNA:   3'- -UGCGUua-GGgGGUg------CUGGG----UGCGGGG- -5'
5469 5' -60.6 NC_001798.1 + 14736 0.66 0.751915
Target:  5'- uCGC---CCCCCACc-CCCAC-CCCCu -3'
miRNA:   3'- uGCGuuaGGGGGUGcuGGGUGcGGGG- -5'
5469 5' -60.6 NC_001798.1 + 18069 0.66 0.751915
Target:  5'- cGCGUAGUCCUCCGgGuaGgCCACGUcaUCCg -3'
miRNA:   3'- -UGCGUUAGGGGGUgC--UgGGUGCG--GGG- -5'
5469 5' -60.6 NC_001798.1 + 51280 0.66 0.751915
Target:  5'- cACGCGGg-CCCCGCGgggaggcuACCUggGCCCg -3'
miRNA:   3'- -UGCGUUagGGGGUGC--------UGGGugCGGGg -5'
5469 5' -60.6 NC_001798.1 + 61698 0.66 0.751915
Target:  5'- -gGCGAUCCuggCCCgcacgACGGCCCAgUGCCgCa -3'
miRNA:   3'- ugCGUUAGG---GGG-----UGCUGGGU-GCGGgG- -5'
5469 5' -60.6 NC_001798.1 + 152057 0.66 0.751915
Target:  5'- gGCGCAcggcccacggggGUCCCCCgaccgcuuaaGCGGgCCGggggucgGCCCCg -3'
miRNA:   3'- -UGCGU------------UAGGGGG----------UGCUgGGUg------CGGGG- -5'
5469 5' -60.6 NC_001798.1 + 77465 0.66 0.751915
Target:  5'- cAUGCcg-CCCucaucgaugCCGCGGCCCGCGCgacgaCCg -3'
miRNA:   3'- -UGCGuuaGGG---------GGUGCUGGGUGCGg----GG- -5'
5469 5' -60.6 NC_001798.1 + 1364 0.66 0.751915
Target:  5'- -gGCcg-CCgCgCACGGCgUCGCGCCCCa -3'
miRNA:   3'- ugCGuuaGGgG-GUGCUG-GGUGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.