miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 1372 0.67 0.9934
Target:  5'- -------cGCAcgGCGUCGCgCCCCAGc -3'
miRNA:   3'- augcauuuCGUuuUGCAGUG-GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 44206 0.67 0.9934
Target:  5'- aGCGUgguGAGGCc--GCG-CugCCCCAGg -3'
miRNA:   3'- aUGCA---UUUCGuuuUGCaGugGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 146423 0.67 0.994316
Target:  5'- gGCGagccGGGCAGAguGCGgaGCCCCCGGa -3'
miRNA:   3'- aUGCau--UUCGUUU--UGCagUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 151496 0.67 0.995842
Target:  5'- -cCGUGcacacGGCAcacACGUCGCCCCCc- -3'
miRNA:   3'- auGCAUu----UCGUuu-UGCAGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 124150 0.67 0.995842
Target:  5'- gGCG-GAGGCcugucccuGCGUCGCCCCguGc -3'
miRNA:   3'- aUGCaUUUCGuuu-----UGCAGUGGGGguC- -5'
5470 3' -49.3 NC_001798.1 + 48320 0.67 0.995842
Target:  5'- gUugGUGAAucccgacgcggcGCAGGACGUCgacgcgaccgcgGCCgCCCGGg -3'
miRNA:   3'- -AugCAUUU------------CGUUUUGCAG------------UGG-GGGUC- -5'
5470 3' -49.3 NC_001798.1 + 63452 0.67 0.995128
Target:  5'- cGCGccgccucGGGCuuGGCGUgGCCCCCGa -3'
miRNA:   3'- aUGCau-----UUCGuuUUGCAgUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 48756 0.67 0.994316
Target:  5'- --gGUGGAcGCGAGAUGUCAgUCCUCGGg -3'
miRNA:   3'- augCAUUU-CGUUUUGCAGU-GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 83386 0.68 0.98515
Target:  5'- aACGUGuuguuGGCGu-GgGUCACCCCgAGg -3'
miRNA:   3'- aUGCAUu----UCGUuuUgCAGUGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 2975 0.68 0.986901
Target:  5'- gGCGUGcGGCGGGGCGgccgGCCCgCGGg -3'
miRNA:   3'- aUGCAUuUCGUUUUGCag--UGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 69512 0.68 0.986901
Target:  5'- cGCGccGGAGCGGGGCGUgGCCCgCGa -3'
miRNA:   3'- aUGCa-UUUCGUUUUGCAgUGGGgGUc -5'
5470 3' -49.3 NC_001798.1 + 80551 0.68 0.986901
Target:  5'- gGCGgggGGGcGCGAGGCGUCccuCCCCgAGg -3'
miRNA:   3'- aUGCa--UUU-CGUUUUGCAGu--GGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 83685 0.68 0.986901
Target:  5'- -cUGgcGGGCGGGACGguggcUCGCCCCCu- -3'
miRNA:   3'- auGCauUUCGUUUUGC-----AGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 74956 0.68 0.988028
Target:  5'- aGCGUGgaggaucugaccucGGGCGAGAgGccCGCCCCCAa -3'
miRNA:   3'- aUGCAU--------------UUCGUUUUgCa-GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 9615 0.68 0.989921
Target:  5'- gGCGgccAGCAAcAGgGcCGCCCCCAGc -3'
miRNA:   3'- aUGCauuUCGUU-UUgCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 131141 0.68 0.989921
Target:  5'- cUGCGUGuccaaccgGAGgGGGACGgcuaCACCCCCGc -3'
miRNA:   3'- -AUGCAU--------UUCgUUUUGCa---GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 14279 0.68 0.991211
Target:  5'- cACGauGAGgGGGACGgcaaaGCCCCCGGa -3'
miRNA:   3'- aUGCauUUCgUUUUGCag---UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 79957 0.69 0.978823
Target:  5'- gGCGUccGGAGCGGcggcgccGCGUCcgccgccggGCCCCCGGg -3'
miRNA:   3'- aUGCA--UUUCGUUu------UGCAG---------UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 50723 0.69 0.978823
Target:  5'- cUGCGUGGGGaCGAGGCc-CACCCCCc- -3'
miRNA:   3'- -AUGCAUUUC-GUUUUGcaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 87837 0.69 0.976325
Target:  5'- gGCGUuauuuccaaacAGGGCcuuGAACGUCacgcaggccGCCCCCAGc -3'
miRNA:   3'- aUGCA-----------UUUCGu--UUUGCAG---------UGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.