miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 48756 0.67 0.994316
Target:  5'- --gGUGGAcGCGAGAUGUCAgUCCUCGGg -3'
miRNA:   3'- augCAUUU-CGUUUUGCAGU-GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 44206 0.67 0.9934
Target:  5'- aGCGUgguGAGGCc--GCG-CugCCCCAGg -3'
miRNA:   3'- aUGCA---UUUCGuuuUGCaGugGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 1372 0.67 0.9934
Target:  5'- -------cGCAcgGCGUCGCgCCCCAGc -3'
miRNA:   3'- augcauuuCGUuuUGCAGUG-GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 135875 0.67 0.9934
Target:  5'- gACGcGGAGUAcugGAGCGUUcugaccCCCCCAGg -3'
miRNA:   3'- aUGCaUUUCGU---UUUGCAGu-----GGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 35196 0.67 0.992368
Target:  5'- gGCGgcGGGCcccuGCGUucguugcugccgCGCCCCCGGu -3'
miRNA:   3'- aUGCauUUCGuuu-UGCA------------GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 68372 0.67 0.992368
Target:  5'- gUGCGUGcGGUAGGGCG-C-CCCCgCAGa -3'
miRNA:   3'- -AUGCAUuUCGUUUUGCaGuGGGG-GUC- -5'
5470 3' -49.3 NC_001798.1 + 143293 0.67 0.992368
Target:  5'- gACGUAGGGgc---CGUcCGCCCCCGGc -3'
miRNA:   3'- aUGCAUUUCguuuuGCA-GUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 150941 0.67 0.992034
Target:  5'- gACGUAguccacugcagaggGAGacaGAGACGggaGCCCCCGGu -3'
miRNA:   3'- aUGCAU--------------UUCg--UUUUGCag-UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 14279 0.68 0.991211
Target:  5'- cACGauGAGgGGGACGgcaaaGCCCCCGGa -3'
miRNA:   3'- aUGCauUUCgUUUUGCag---UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 9615 0.68 0.989921
Target:  5'- gGCGgccAGCAAcAGgGcCGCCCCCAGc -3'
miRNA:   3'- aUGCauuUCGUU-UUgCaGUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 131141 0.68 0.989921
Target:  5'- cUGCGUGuccaaccgGAGgGGGACGgcuaCACCCCCGc -3'
miRNA:   3'- -AUGCAU--------UUCgUUUUGCa---GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 74956 0.68 0.988028
Target:  5'- aGCGUGgaggaucugaccucGGGCGAGAgGccCGCCCCCAa -3'
miRNA:   3'- aUGCAU--------------UUCGUUUUgCa-GUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 2975 0.68 0.986901
Target:  5'- gGCGUGcGGCGGGGCGgccgGCCCgCGGg -3'
miRNA:   3'- aUGCAUuUCGUUUUGCag--UGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 69512 0.68 0.986901
Target:  5'- cGCGccGGAGCGGGGCGUgGCCCgCGa -3'
miRNA:   3'- aUGCa-UUUCGUUUUGCAgUGGGgGUc -5'
5470 3' -49.3 NC_001798.1 + 80551 0.68 0.986901
Target:  5'- gGCGgggGGGcGCGAGGCGUCccuCCCCgAGg -3'
miRNA:   3'- aUGCa--UUU-CGUUUUGCAGu--GGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 83685 0.68 0.986901
Target:  5'- -cUGgcGGGCGGGACGguggcUCGCCCCCu- -3'
miRNA:   3'- auGCauUUCGUUUUGC-----AGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 83386 0.68 0.98515
Target:  5'- aACGUGuuguuGGCGu-GgGUCACCCCgAGg -3'
miRNA:   3'- aUGCAUu----UCGUuuUgCAGUGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 51106 0.69 0.983227
Target:  5'- gAUGgcGAGCGAAGaGcCGCCCCCGc -3'
miRNA:   3'- aUGCauUUCGUUUUgCaGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 79957 0.69 0.978823
Target:  5'- gGCGUccGGAGCGGcggcgccGCGUCcgccgccggGCCCCCGGg -3'
miRNA:   3'- aUGCA--UUUCGUUu------UGCAG---------UGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 50723 0.69 0.978823
Target:  5'- cUGCGUGGGGaCGAGGCc-CACCCCCc- -3'
miRNA:   3'- -AUGCAUUUC-GUUUUGcaGUGGGGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.