miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 5' -65.7 NC_001798.1 + 140505 0.66 0.543216
Target:  5'- aCCC-GGCcaaccuuccgGGGuGGACGCGGCUGUucuCGUCc -3'
miRNA:   3'- -GGGaCCG----------CCC-UCUGCGCCGGCG---GCGG- -5'
5470 5' -65.7 NC_001798.1 + 32246 0.66 0.543216
Target:  5'- -gCUGGUGGGAGcguCGCGuCCGCguccggCGCUg -3'
miRNA:   3'- ggGACCGCCCUCu--GCGCcGGCG------GCGG- -5'
5470 5' -65.7 NC_001798.1 + 25581 0.66 0.543216
Target:  5'- gCCgGGCGaGGAccuGGcCGCgGGCCG-CGCCg -3'
miRNA:   3'- gGGaCCGC-CCU---CU-GCG-CCGGCgGCGG- -5'
5470 5' -65.7 NC_001798.1 + 34960 0.66 0.543216
Target:  5'- ---cGGCGccGGAGgGgGCGGCCGCCGa- -3'
miRNA:   3'- gggaCCGC--CCUC-UgCGCCGGCGGCgg -5'
5470 5' -65.7 NC_001798.1 + 97491 0.66 0.543216
Target:  5'- aCCgggggGGcCGaGGAGGaagaGCcccgGGCCGCCGCg -3'
miRNA:   3'- gGGa----CC-GC-CCUCUg---CG----CCGGCGGCGg -5'
5470 5' -65.7 NC_001798.1 + 104077 0.66 0.543216
Target:  5'- cUCCaGcGCGGuGAGGCGCacgagCGCCGCCu -3'
miRNA:   3'- -GGGaC-CGCC-CUCUGCGccg--GCGGCGG- -5'
5470 5' -65.7 NC_001798.1 + 31860 0.66 0.543216
Target:  5'- cCCCacgccGCGGaGGGgGCGGCgGCCcGCCc -3'
miRNA:   3'- -GGGac---CGCCcUCUgCGCCGgCGG-CGG- -5'
5470 5' -65.7 NC_001798.1 + 128363 0.66 0.542296
Target:  5'- aCgaGGCGGc-GACGCaaaaccaGGCCGaCUGCCa -3'
miRNA:   3'- gGgaCCGCCcuCUGCG-------CCGGC-GGCGG- -5'
5470 5' -65.7 NC_001798.1 + 92368 0.66 0.540457
Target:  5'- gCCUGaccGUGGaGAGcggguuugaggccaACGUGGCCGCgGUCg -3'
miRNA:   3'- gGGAC---CGCC-CUC--------------UGCGCCGGCGgCGG- -5'
5470 5' -65.7 NC_001798.1 + 15504 0.66 0.534038
Target:  5'- gUgUGGUGGGGGGCguuuucgcuGCGGaggCGCUGCUg -3'
miRNA:   3'- gGgACCGCCCUCUG---------CGCCg--GCGGCGG- -5'
5470 5' -65.7 NC_001798.1 + 43081 0.66 0.534038
Target:  5'- gCCgGGCuc-GGGCGCcGCCGCCGCg -3'
miRNA:   3'- gGGaCCGcccUCUGCGcCGGCGGCGg -5'
5470 5' -65.7 NC_001798.1 + 53818 0.66 0.534038
Target:  5'- ---cGGCGGacaAGuACGUGuGUCGCCGCCu -3'
miRNA:   3'- gggaCCGCCc--UC-UGCGC-CGGCGGCGG- -5'
5470 5' -65.7 NC_001798.1 + 58096 0.66 0.534038
Target:  5'- gCCCc-GCaGGGu--CGCGGCCGCCcaggGCCc -3'
miRNA:   3'- -GGGacCG-CCCucuGCGCCGGCGG----CGG- -5'
5470 5' -65.7 NC_001798.1 + 150186 0.66 0.531296
Target:  5'- cCCCUccgcGGCGuGGGGG-GCGGCaccggggguguuggUGCCGCg -3'
miRNA:   3'- -GGGA----CCGC-CCUCUgCGCCG--------------GCGGCGg -5'
5470 5' -65.7 NC_001798.1 + 125893 0.66 0.524916
Target:  5'- aCUUGGaauuGGAGGCGCGGCUaaagucCCGCg -3'
miRNA:   3'- gGGACCgc--CCUCUGCGCCGGc-----GGCGg -5'
5470 5' -65.7 NC_001798.1 + 21949 0.66 0.524916
Target:  5'- cCCCUuugggcggaGcGCGGGAuGACGCgGGCCccgggcagGgCGCCa -3'
miRNA:   3'- -GGGA---------C-CGCCCU-CUGCG-CCGG--------CgGCGG- -5'
5470 5' -65.7 NC_001798.1 + 29965 0.66 0.524916
Target:  5'- gCCCgcuuaagcGGuCGGGGGAccccCGUgGGCCGUgCGCCg -3'
miRNA:   3'- -GGGa-------CC-GCCCUCU----GCG-CCGGCG-GCGG- -5'
5470 5' -65.7 NC_001798.1 + 98500 0.66 0.524916
Target:  5'- ---cGGCGGGAgcGACGCGcccCCGuaggcCCGCCa -3'
miRNA:   3'- gggaCCGCCCU--CUGCGCc--GGC-----GGCGG- -5'
5470 5' -65.7 NC_001798.1 + 110217 0.66 0.524916
Target:  5'- aCCUGcgaagggcacgcGCGGGAGAUugagccgaaGCGGCUGgUGCg -3'
miRNA:   3'- gGGAC------------CGCCCUCUG---------CGCCGGCgGCGg -5'
5470 5' -65.7 NC_001798.1 + 153958 0.66 0.524916
Target:  5'- gCCgcagGaGCGa-GGACGCGGCCGgCGCg -3'
miRNA:   3'- gGGa---C-CGCccUCUGCGCCGGCgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.