miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 5' -50.3 NC_001798.1 + 37845 0.68 0.984195
Target:  5'- uGuuCUGCcGCGCGAGCGGccGUGCCGc -3'
miRNA:   3'- gCugGACGaUGUGCUUGUC--UAUGGUc -5'
5471 5' -50.3 NC_001798.1 + 62128 0.68 0.984195
Target:  5'- gCGACCUGCUGCAguacuucaaGAugAGuUACCc- -3'
miRNA:   3'- -GCUGGACGAUGUg--------CUugUCuAUGGuc -5'
5471 5' -50.3 NC_001798.1 + 45813 0.68 0.980055
Target:  5'- uGGCCcgacGCgagGCGCGGucUAGAUGCCAGu -3'
miRNA:   3'- gCUGGa---CGa--UGUGCUu-GUCUAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 83980 0.68 0.980055
Target:  5'- gGGCCUGCUcggcgGCGCGAcACAGGauccGCCGc -3'
miRNA:   3'- gCUGGACGA-----UGUGCU-UGUCUa---UGGUc -5'
5471 5' -50.3 NC_001798.1 + 102733 0.68 0.977706
Target:  5'- gCGACUUGacgcGCACGGACGGcgACCu- -3'
miRNA:   3'- -GCUGGACga--UGUGCUUGUCuaUGGuc -5'
5471 5' -50.3 NC_001798.1 + 128162 0.69 0.974624
Target:  5'- gCGGCCUGCUGCGCGGcguccGCuccccucugGCCAu -3'
miRNA:   3'- -GCUGGACGAUGUGCU-----UGucua-----UGGUc -5'
5471 5' -50.3 NC_001798.1 + 135402 0.69 0.972405
Target:  5'- -uGCCUGCagauCGAGCAGAcgGCCAGc -3'
miRNA:   3'- gcUGGACGauguGCUUGUCUa-UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 48948 0.69 0.969437
Target:  5'- aCGAUCUGUUugcggACGCGGACGGGguuucGCCAc -3'
miRNA:   3'- -GCUGGACGA-----UGUGCUUGUCUa----UGGUc -5'
5471 5' -50.3 NC_001798.1 + 125617 0.69 0.966249
Target:  5'- ---aCUGCUGCACGu-CGGAcGCCAGc -3'
miRNA:   3'- gcugGACGAUGUGCuuGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 100610 0.7 0.955296
Target:  5'- gCGGCCUGCUGgACuacACGGAgguCCAGc -3'
miRNA:   3'- -GCUGGACGAUgUGcu-UGUCUau-GGUC- -5'
5471 5' -50.3 NC_001798.1 + 124969 0.71 0.937768
Target:  5'- uGACCUGCUcCGCGugguccccgagcagcACGGcgGCCAGa -3'
miRNA:   3'- gCUGGACGAuGUGCu--------------UGUCuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 132526 0.71 0.926729
Target:  5'- gGAgCUGCUgaucuACAUGGACGGGU-CCGGg -3'
miRNA:   3'- gCUgGACGA-----UGUGCUUGUCUAuGGUC- -5'
5471 5' -50.3 NC_001798.1 + 5990 0.71 0.926729
Target:  5'- -cACCgGCUGCGCG-GCGGAgACCGGg -3'
miRNA:   3'- gcUGGaCGAUGUGCuUGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 124651 0.71 0.921073
Target:  5'- aCGAUCgUGCUGCGCGAGCcGu--CCGGg -3'
miRNA:   3'- -GCUGG-ACGAUGUGCUUGuCuauGGUC- -5'
5471 5' -50.3 NC_001798.1 + 49527 0.71 0.919326
Target:  5'- gCGACCUGCgggagaUGCugcgcaccacgaucGCGGACAGGUACUAc -3'
miRNA:   3'- -GCUGGACG------AUG--------------UGCUUGUCUAUGGUc -5'
5471 5' -50.3 NC_001798.1 + 61717 0.71 0.915161
Target:  5'- aCGGCCcagUGCcGCACGGACgaGGAgGCCAGu -3'
miRNA:   3'- -GCUGG---ACGaUGUGCUUG--UCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 72183 0.72 0.895899
Target:  5'- cCGACaacaucgagcagCUGCUGCGCGAGCuguacguGAUcGCCAGg -3'
miRNA:   3'- -GCUG------------GACGAUGUGCUUGu------CUA-UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 103963 0.76 0.739652
Target:  5'- gCGuGCCUGCUGgGCGAGCAGc--CCAGg -3'
miRNA:   3'- -GC-UGGACGAUgUGCUUGUCuauGGUC- -5'
5471 5' -50.3 NC_001798.1 + 83821 0.77 0.656406
Target:  5'- aCGGCCUGaUGCACGGACGG--GCCGGu -3'
miRNA:   3'- -GCUGGACgAUGUGCUUGUCuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 76969 0.78 0.624573
Target:  5'- gGACCUguggggGCUGCugGGGCAG-UACCGGg -3'
miRNA:   3'- gCUGGA------CGAUGugCUUGUCuAUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.