miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 3' -56.6 NC_001798.1 + 2416 0.71 0.628395
Target:  5'- aGGGCGCcGgcgUGUggCUGGGCCCcggcgGCUGg -3'
miRNA:   3'- -UCUGCGaCa--ACAaaGACCCGGG-----CGGC- -5'
5472 3' -56.6 NC_001798.1 + 11180 0.66 0.876726
Target:  5'- gGGGCGgUGggGc----GGGCCUGCCGa -3'
miRNA:   3'- -UCUGCgACaaCaaagaCCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 15117 0.69 0.729194
Target:  5'- uGGCGCUGUcGUcguccUCgggGGGUUCGCCGu -3'
miRNA:   3'- uCUGCGACAaCAa----AGa--CCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 23213 0.66 0.86946
Target:  5'- cGACGCg---GgccgCUGGGUCCGCgGa -3'
miRNA:   3'- uCUGCGacaaCaaa-GACCCGGGCGgC- -5'
5472 3' -56.6 NC_001798.1 + 25220 0.66 0.870196
Target:  5'- cGGCGCUGacccgcc--GGCCCGCCGa -3'
miRNA:   3'- uCUGCGACaacaaagacCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 25800 0.66 0.8906
Target:  5'- cGGCGCcGUggaGUUcCUGGGgCUGCUGg -3'
miRNA:   3'- uCUGCGaCAa--CAAaGACCCgGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 26290 0.7 0.669146
Target:  5'- -cGCGCUGggGc--CUGGGCgCGCCGc -3'
miRNA:   3'- ucUGCGACaaCaaaGACCCGgGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 40827 0.67 0.830078
Target:  5'- gGGGcCGCUGguuccgcGUUUUUGGGggccgagcCCCGCCGc -3'
miRNA:   3'- -UCU-GCGACaa-----CAAAGACCC--------GGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 42553 0.68 0.767679
Target:  5'- cGACGgaGUccgGUUcgCUGGGCgUCGCCGc -3'
miRNA:   3'- uCUGCgaCAa--CAAa-GACCCG-GGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 54129 0.66 0.883774
Target:  5'- cGACGCUuaccggGUaUGUcgUCUGGGCCU-CCGa -3'
miRNA:   3'- uCUGCGA------CA-ACAa-AGACCCGGGcGGC- -5'
5472 3' -56.6 NC_001798.1 + 58299 0.67 0.835881
Target:  5'- gGGGCGCga--GggUCUGacacagcuccgucaGGCCCGCCGc -3'
miRNA:   3'- -UCUGCGacaaCaaAGAC--------------CCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 60159 0.67 0.83834
Target:  5'- uGGCGUUGgcGgccgCUuGGCCCGCCu -3'
miRNA:   3'- uCUGCGACaaCaaa-GAcCCGGGCGGc -5'
5472 3' -56.6 NC_001798.1 + 65575 0.73 0.517909
Target:  5'- aGGGCGCUGaagaUGUUgucgcagcgCUGGGCCuccuCGCCGg -3'
miRNA:   3'- -UCUGCGACa---ACAAa--------GACCCGG----GCGGC- -5'
5472 3' -56.6 NC_001798.1 + 71628 0.74 0.451663
Target:  5'- cAGACGCUGgcGcgcaUCaUGGGCCCgGCCGu -3'
miRNA:   3'- -UCUGCGACaaCaa--AG-ACCCGGG-CGGC- -5'
5472 3' -56.6 NC_001798.1 + 75184 0.76 0.357807
Target:  5'- gAGACGCUGg-------GGGCCCGCCGc -3'
miRNA:   3'- -UCUGCGACaacaaagaCCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 77250 0.66 0.883774
Target:  5'- cGGACGCgg-UGUcggccCUGGGCgCgGCCGc -3'
miRNA:   3'- -UCUGCGacaACAaa---GACCCG-GgCGGC- -5'
5472 3' -56.6 NC_001798.1 + 77530 0.67 0.821636
Target:  5'- cGAgGCUGgg--UUCggGGGCCUGCUGc -3'
miRNA:   3'- uCUgCGACaacaAAGa-CCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 86222 0.68 0.786238
Target:  5'- cGAC-CUGgac---CUGGGCCCGCUGa -3'
miRNA:   3'- uCUGcGACaacaaaGACCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 92921 0.67 0.83834
Target:  5'- --cUGCUGUUcgaGgcggUCgucGGGCCCGCCGc -3'
miRNA:   3'- ucuGCGACAA---Caa--AGa--CCCGGGCGGC- -5'
5472 3' -56.6 NC_001798.1 + 93744 0.76 0.365756
Target:  5'- cGACGCUGaUGcggCUgcGGGCCCGCCa -3'
miRNA:   3'- uCUGCGACaACaaaGA--CCCGGGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.