miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 26003 0.66 0.547342
Target:  5'- cUCCGGCcgcguguucGGGCcgGGGgUCUUCGCGCg -3'
miRNA:   3'- -GGGCCGc--------CCCGuaCCUgGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 54808 0.66 0.547342
Target:  5'- gCCCgcgGGCGucGGGCuUGGcGCCaCCCC-CGCc -3'
miRNA:   3'- -GGG---CCGC--CCCGuACC-UGG-GGGGuGCG- -5'
5472 5' -65 NC_001798.1 + 32237 0.66 0.546414
Target:  5'- gCgGGCGGGGCugGUGGgagcgucgcguccGCgUCCgGCGCu -3'
miRNA:   3'- gGgCCGCCCCG--UACC-------------UGgGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 31820 0.66 0.546414
Target:  5'- aCCCGG-GGucccccgcGGCAccaacacccccggUGccGCCCCCCACGCc -3'
miRNA:   3'- -GGGCCgCC--------CCGU-------------ACc-UGGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 39627 0.66 0.546414
Target:  5'- gCCGGCGGGGUuuugguGUGGagucggcGCCgCCgGgGCc -3'
miRNA:   3'- gGGCCGCCCCG------UACC-------UGGgGGgUgCG- -5'
5472 5' -65 NC_001798.1 + 28855 0.66 0.545488
Target:  5'- aCCGGCGaGGGCGgccucggccggcGGAgCCCCgGaGCu -3'
miRNA:   3'- gGGCCGC-CCCGUa-----------CCUgGGGGgUgCG- -5'
5472 5' -65 NC_001798.1 + 5090 0.66 0.539015
Target:  5'- -gUGGgGGGGgGUGGuuggcagucucucucCCCCCCGUGCg -3'
miRNA:   3'- ggGCCgCCCCgUACCu--------------GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 26185 0.66 0.538092
Target:  5'- uCCCGGCGcuggacGGCcgGGccGCCgCCUCGgGCg -3'
miRNA:   3'- -GGGCCGCc-----CCGuaCC--UGG-GGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 41544 0.66 0.538092
Target:  5'- cCCCGGCGGGGC----GCa--CCGCGUa -3'
miRNA:   3'- -GGGCCGCCCCGuaccUGgggGGUGCG- -5'
5472 5' -65 NC_001798.1 + 48670 0.66 0.538092
Target:  5'- uUCCGagcGCGGGGgAcGGGCCgCCCGgaGCg -3'
miRNA:   3'- -GGGC---CGCCCCgUaCCUGGgGGGUg-CG- -5'
5472 5' -65 NC_001798.1 + 79530 0.66 0.538092
Target:  5'- gCCGGCGGagacCcgGGGCCCCUgGUGCu -3'
miRNA:   3'- gGGCCGCCcc--GuaCCUGGGGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 148083 0.66 0.53717
Target:  5'- aCgGGCcgGGGGCcgGGGCCgCUagggaaagguaggCACGCg -3'
miRNA:   3'- gGgCCG--CCCCGuaCCUGGgGG-------------GUGCG- -5'
5472 5' -65 NC_001798.1 + 48963 0.66 0.536248
Target:  5'- aCgCGGaCGGGGUuucgccaccGCCCCCCAgGCc -3'
miRNA:   3'- -GgGCC-GCCCCGuacc-----UGGGGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 25665 0.66 0.528897
Target:  5'- gCUGGCGGcccugggcaaccGGCucugcGGGCCCgCCACGg -3'
miRNA:   3'- gGGCCGCC------------CCGua---CCUGGGgGGUGCg -5'
5472 5' -65 NC_001798.1 + 138893 0.66 0.528897
Target:  5'- gCUGGuCGGuccGCuUGGGCCgCCCgGCGCa -3'
miRNA:   3'- gGGCC-GCCc--CGuACCUGG-GGGgUGCG- -5'
5472 5' -65 NC_001798.1 + 150225 0.66 0.528897
Target:  5'- gCC-GCGGGGgaccCcgGGuccuCCCUCCGCGCc -3'
miRNA:   3'- gGGcCGCCCC----GuaCCu---GGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 90679 0.66 0.528897
Target:  5'- cCCCGGCGacucGcGCA-GGGCCgCCgCCAgGCg -3'
miRNA:   3'- -GGGCCGCc---C-CGUaCCUGG-GG-GGUgCG- -5'
5472 5' -65 NC_001798.1 + 137328 0.66 0.528897
Target:  5'- aUCGGC-GGGCGUGGggucgGCCauCCCUGCGUu -3'
miRNA:   3'- gGGCCGcCCCGUACC-----UGG--GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 32766 0.66 0.528897
Target:  5'- aCCCGuggucuCGGGaGCA-GGGCgCgCCCGCGCc -3'
miRNA:   3'- -GGGCc-----GCCC-CGUaCCUGgG-GGGUGCG- -5'
5472 5' -65 NC_001798.1 + 83684 0.66 0.52798
Target:  5'- aCUGGCGGGcGggacgGUGGcucGCCCCCUuucauagGCGCg -3'
miRNA:   3'- gGGCCGCCC-Cg----UACC---UGGGGGG-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.