miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 3' -62.9 NC_001798.1 + 87277 0.66 0.633273
Target:  5'- uUCUGGCC-UCCCUGGuCGUgcUG-GCCg -3'
miRNA:   3'- -GGGCCGGuAGGGGCC-GCGguACuCGG- -5'
5473 3' -62.9 NC_001798.1 + 86570 0.66 0.633273
Target:  5'- gUuuGGCCA-CCCCcGCGCCGaccaucgcgacGAGCUg -3'
miRNA:   3'- -GggCCGGUaGGGGcCGCGGUa----------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 67332 0.66 0.633273
Target:  5'- uUCGGCCAUCCCCgccGGCuGCgAcguuUGAGaUCg -3'
miRNA:   3'- gGGCCGGUAGGGG---CCG-CGgU----ACUC-GG- -5'
5473 3' -62.9 NC_001798.1 + 103591 0.66 0.633273
Target:  5'- gCUCGcGCauuUCCgCCGaCGCCAUGGGCa -3'
miRNA:   3'- -GGGC-CGgu-AGG-GGCcGCGGUACUCGg -5'
5473 3' -62.9 NC_001798.1 + 152555 0.66 0.633273
Target:  5'- -gCGGCCccGUCCCCGGgGaCCAaccGGGUg -3'
miRNA:   3'- ggGCCGG--UAGGGGCCgC-GGUa--CUCGg -5'
5473 3' -62.9 NC_001798.1 + 23344 0.66 0.633273
Target:  5'- gCCGGCgCGcCCCCcgccGGCGCUcgGccGCCu -3'
miRNA:   3'- gGGCCG-GUaGGGG----CCGCGGuaCu-CGG- -5'
5473 3' -62.9 NC_001798.1 + 47378 0.66 0.633273
Target:  5'- aCCCGcagggaGCCAcUCCCgCGGCccCCGUGGGUUa -3'
miRNA:   3'- -GGGC------CGGU-AGGG-GCCGc-GGUACUCGG- -5'
5473 3' -62.9 NC_001798.1 + 48357 0.66 0.633273
Target:  5'- aCCgCGGCCG--CCCGGgGCCGccccgcgGGGCg -3'
miRNA:   3'- -GG-GCCGGUagGGGCCgCGGUa------CUCGg -5'
5473 3' -62.9 NC_001798.1 + 74640 0.66 0.633273
Target:  5'- aCCGGCCccccgaggCCCCccggGGgGCCucGGGCCc -3'
miRNA:   3'- gGGCCGGua------GGGG----CCgCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 134915 0.66 0.633273
Target:  5'- gCCGGCCG-CCgCCGcCGCC--GAGUCg -3'
miRNA:   3'- gGGCCGGUaGG-GGCcGCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 408 0.66 0.63037
Target:  5'- uCCCGccgagcucgcggcaGCCccucccCCCCGcGCGCCAcgGGGCUg -3'
miRNA:   3'- -GGGC--------------CGGua----GGGGC-CGCGGUa-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 80314 0.66 0.623597
Target:  5'- gCUGGCg--CCCUGGCGCuCGgccuugGAGCUc -3'
miRNA:   3'- gGGCCGguaGGGGCCGCG-GUa-----CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 134153 0.66 0.623597
Target:  5'- uCUCGGCC---CCCGGgGCCGUcgcGGCCn -3'
miRNA:   3'- -GGGCCGGuagGGGCCgCGGUAc--UCGG- -5'
5473 3' -62.9 NC_001798.1 + 23682 0.66 0.623597
Target:  5'- -gUGGCCggCCgCGaCGCCAcGGGCCg -3'
miRNA:   3'- ggGCCGGuaGGgGCcGCGGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 52129 0.66 0.623597
Target:  5'- gCCCGcuUCAaCCCCGGCGCCGUcaaauGCg -3'
miRNA:   3'- -GGGCc-GGUaGGGGCCGCGGUAcu---CGg -5'
5473 3' -62.9 NC_001798.1 + 75062 0.66 0.623597
Target:  5'- uCCCcGCCuccUCCCCGaCGCCcauAGCCg -3'
miRNA:   3'- -GGGcCGGu--AGGGGCcGCGGuacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 51654 0.66 0.613927
Target:  5'- cCCCGGCCGaCCCaaaGGUGUUuuuccGCCa -3'
miRNA:   3'- -GGGCCGGUaGGGg--CCGCGGuacu-CGG- -5'
5473 3' -62.9 NC_001798.1 + 109024 0.66 0.613927
Target:  5'- cCCgCGGUgcUCCCCGG-GCCuccGGCCg -3'
miRNA:   3'- -GG-GCCGguAGGGGCCgCGGuacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 91959 0.66 0.613927
Target:  5'- cCCCgGGCCccCCcguCCGGCGCgAUccgguggcGGGCCa -3'
miRNA:   3'- -GGG-CCGGuaGG---GGCCGCGgUA--------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 85496 0.66 0.613927
Target:  5'- gCCUGGgCGcgCCCCacuGCGCCGcGAGCa -3'
miRNA:   3'- -GGGCCgGUa-GGGGc--CGCGGUaCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.