miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 5' -51.1 NC_001798.1 + 95186 0.66 0.990539
Target:  5'- cGAccGCGUGUuucAGGCCGgGAACUGg -3'
miRNA:   3'- aCU--UGCACGugcUCCGGCaUUUGACg -5'
5473 5' -51.1 NC_001798.1 + 85256 0.66 0.990539
Target:  5'- --cGCGgccGCGCGGGGCCGcgcGCgagGCu -3'
miRNA:   3'- acuUGCa--CGUGCUCCGGCauuUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 87859 0.66 0.990539
Target:  5'- uUGAACGU-CACGcAGGCCGcccccAGCaggUGCg -3'
miRNA:   3'- -ACUUGCAcGUGC-UCCGGCau---UUG---ACG- -5'
5473 5' -51.1 NC_001798.1 + 93093 0.66 0.989204
Target:  5'- gGGGCGcGCGCGAcGCCGgGAACaaggGCc -3'
miRNA:   3'- aCUUGCaCGUGCUcCGGCaUUUGa---CG- -5'
5473 5' -51.1 NC_001798.1 + 15475 0.66 0.989204
Target:  5'- -aGACGUGgGCGgggGGGUCGUGggGGCUGg -3'
miRNA:   3'- acUUGCACgUGC---UCCGGCAU--UUGACg -5'
5473 5' -51.1 NC_001798.1 + 97430 0.66 0.989204
Target:  5'- cGAGCaGUGCgACGAGGa-Ggc-GCUGCg -3'
miRNA:   3'- aCUUG-CACG-UGCUCCggCauuUGACG- -5'
5473 5' -51.1 NC_001798.1 + 121517 0.66 0.989204
Target:  5'- -aGGCGUGUACGAcccguacacGGUCGcgGcGCUGCg -3'
miRNA:   3'- acUUGCACGUGCU---------CCGGCa-UuUGACG- -5'
5473 5' -51.1 NC_001798.1 + 110267 0.67 0.988336
Target:  5'- cGAAaacCG-GCGCGAccucggccucgugggGGCCGUGuuuCUGCg -3'
miRNA:   3'- aCUU---GCaCGUGCU---------------CCGGCAUuu-GACG- -5'
5473 5' -51.1 NC_001798.1 + 27221 0.67 0.987728
Target:  5'- gGGGCGggGCGCGGGGgaGgcGGCcGCg -3'
miRNA:   3'- aCUUGCa-CGUGCUCCggCauUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 43960 0.67 0.987728
Target:  5'- cUGAGgGUGUcgggGCGuGGGUCGUGgggGAUUGCg -3'
miRNA:   3'- -ACUUgCACG----UGC-UCCGGCAU---UUGACG- -5'
5473 5' -51.1 NC_001798.1 + 100069 0.67 0.9861
Target:  5'- gUGAAUGacaUGCugGGGcgcaucGCCGUcgcguggugcGAGCUGCa -3'
miRNA:   3'- -ACUUGC---ACGugCUC------CGGCA----------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 24669 0.67 0.9861
Target:  5'- cGGcCGUGC-CGGGGCUGgccgGAGCccgGCc -3'
miRNA:   3'- aCUuGCACGuGCUCCGGCa---UUUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 101877 0.67 0.984312
Target:  5'- gUGGGCGUGUGCGGGGgaGg--GCUGa -3'
miRNA:   3'- -ACUUGCACGUGCUCCggCauuUGACg -5'
5473 5' -51.1 NC_001798.1 + 22348 0.67 0.984312
Target:  5'- cGGGCGUcgGgGCGGGGCCGcgcauaaUGCg -3'
miRNA:   3'- aCUUGCA--CgUGCUCCGGCauuug--ACG- -5'
5473 5' -51.1 NC_001798.1 + 31137 0.67 0.984312
Target:  5'- aGAGCGccccgGCGCGGGGgCGgcGG-UGCg -3'
miRNA:   3'- aCUUGCa----CGUGCUCCgGCauUUgACG- -5'
5473 5' -51.1 NC_001798.1 + 118933 0.67 0.984312
Target:  5'- cGGACGUGCGCcugGAGucGCUGgaccucacGCUGCg -3'
miRNA:   3'- aCUUGCACGUG---CUC--CGGCauu-----UGACG- -5'
5473 5' -51.1 NC_001798.1 + 124310 0.67 0.984312
Target:  5'- --cACcUGCACGAGGUCGUcgugggccgGGACgGCg -3'
miRNA:   3'- acuUGcACGUGCUCCGGCA---------UUUGaCG- -5'
5473 5' -51.1 NC_001798.1 + 36556 0.67 0.982354
Target:  5'- cGGGCGggggcGCGCGGcGGCCGggcggGGGCgcgcgGCg -3'
miRNA:   3'- aCUUGCa----CGUGCU-CCGGCa----UUUGa----CG- -5'
5473 5' -51.1 NC_001798.1 + 36514 0.67 0.982354
Target:  5'- cGGGCGggggcGCGCGGcGGCCGggcggGGGCgcgcgGCg -3'
miRNA:   3'- aCUUGCa----CGUGCU-CCGGCa----UUUGa----CG- -5'
5473 5' -51.1 NC_001798.1 + 76485 0.67 0.982354
Target:  5'- -cGGCGcaGCuCGGGGCUGgccGAACUGCa -3'
miRNA:   3'- acUUGCa-CGuGCUCCGGCa--UUUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.