miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 3' -56.3 NC_001798.1 + 61853 0.83 0.145207
Target:  5'- gGGGAACGCGGGccgccggcccaGcCCGGCGGCCCCCu -3'
miRNA:   3'- gUUUUUGCGCCU-----------U-GGUCGCCGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 104778 0.8 0.21201
Target:  5'- cCAGGuAGCGCGGAggcggGCCAGCaGGUCCCCGa -3'
miRNA:   3'- -GUUU-UUGCGCCU-----UGGUCG-CCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 14359 0.79 0.245434
Target:  5'- --cGGACGCGGGGCCGguggguGCGGCCCCa- -3'
miRNA:   3'- guuUUUGCGCCUUGGU------CGCCGGGGgu -5'
5474 3' -56.3 NC_001798.1 + 53044 0.79 0.257511
Target:  5'- -cGGGACGCGGcauaccuccGACCGGCggGGCCCCCGa -3'
miRNA:   3'- guUUUUGCGCC---------UUGGUCG--CCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 4489 0.77 0.3179
Target:  5'- -----cCGCGGAcCCAGCGGCCCgCGu -3'
miRNA:   3'- guuuuuGCGCCUuGGUCGCCGGGgGU- -5'
5474 3' -56.3 NC_001798.1 + 151836 0.77 0.325232
Target:  5'- aGAGGGCGCGGGGCgugaGGCGGgaCCCCCGc -3'
miRNA:   3'- gUUUUUGCGCCUUGg---UCGCC--GGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 32551 0.77 0.339506
Target:  5'- gGGGAACGUGGcggaccugcugcgGGCC-GCGGCCCCCGc -3'
miRNA:   3'- gUUUUUGCGCC-------------UUGGuCGCCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 4047 0.77 0.340269
Target:  5'- ----cGCGCGGGcCCGGCGGCgCUCCAg -3'
miRNA:   3'- guuuuUGCGCCUuGGUCGCCG-GGGGU- -5'
5474 3' -56.3 NC_001798.1 + 9672 0.76 0.347975
Target:  5'- gGAGGGCGCGGGAUgGGgGGCUCUCAc -3'
miRNA:   3'- gUUUUUGCGCCUUGgUCgCCGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 2607 0.76 0.355804
Target:  5'- gGGGGGCGCGGGGcgccgcCCGGCGGCgCCCu -3'
miRNA:   3'- gUUUUUGCGCCUU------GGUCGCCGgGGGu -5'
5474 3' -56.3 NC_001798.1 + 145396 0.76 0.371831
Target:  5'- ---cGACGCGGGGaaAGCGcGCCCCCGc -3'
miRNA:   3'- guuuUUGCGCCUUggUCGC-CGGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 98603 0.76 0.380027
Target:  5'- ------gGCGGccCCGGCGGCCCCCc -3'
miRNA:   3'- guuuuugCGCCuuGGUCGCCGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 22797 0.76 0.388343
Target:  5'- ------gGCGGAgacgACCGGCGGCCCCgGa -3'
miRNA:   3'- guuuuugCGCCU----UGGUCGCCGGGGgU- -5'
5474 3' -56.3 NC_001798.1 + 93370 0.76 0.388343
Target:  5'- gGAcGACGCcGGGCCGGCGGaCCCCAa -3'
miRNA:   3'- gUUuUUGCGcCUUGGUCGCCgGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 36395 0.75 0.396777
Target:  5'- ----uGCGCGGcGCCGG-GGCCCCCc -3'
miRNA:   3'- guuuuUGCGCCuUGGUCgCCGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 52971 0.75 0.405329
Target:  5'- gGGAGGCGCGcGACCgggcugGGCGGCCCgCCAc -3'
miRNA:   3'- gUUUUUGCGCcUUGG------UCGCCGGG-GGU- -5'
5474 3' -56.3 NC_001798.1 + 21959 0.75 0.405329
Target:  5'- -cGGAGCGCGGGAUgAcGCGGgCCCCGg -3'
miRNA:   3'- guUUUUGCGCCUUGgU-CGCCgGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 90076 0.75 0.422775
Target:  5'- -cAGGACGacgGGGGCCGGCaGGCCCCUg -3'
miRNA:   3'- guUUUUGCg--CCUUGGUCG-CCGGGGGu -5'
5474 3' -56.3 NC_001798.1 + 12072 0.75 0.422775
Target:  5'- ---cAACGCGGGGgCAGUGGuUCCCCAg -3'
miRNA:   3'- guuuUUGCGCCUUgGUCGCC-GGGGGU- -5'
5474 3' -56.3 NC_001798.1 + 153047 0.74 0.440664
Target:  5'- ----cGCGCGGuugGCCGGCGccGCCCCCu -3'
miRNA:   3'- guuuuUGCGCCu--UGGUCGC--CGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.