miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 5' -57.9 NC_001798.1 + 153756 0.67 0.797867
Target:  5'- gCCAGguGGGGcGGaaggGGGCG-CUGCGGc -3'
miRNA:   3'- aGGUU--UCCCaCCag--CCCGCaGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 78541 0.67 0.797867
Target:  5'- aCCGAGcGGGUcauGG-CGGGC--CUGCGGg -3'
miRNA:   3'- aGGUUU-CCCA---CCaGCCCGcaGACGCC- -5'
5474 5' -57.9 NC_001798.1 + 146073 0.67 0.789019
Target:  5'- -aCGGGGGGgaggGGUCcgGGGCGag-GCGGg -3'
miRNA:   3'- agGUUUCCCa---CCAG--CCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 2571 0.67 0.789019
Target:  5'- gCCGcGGGGcGGg-GGGCGUCcgcGCGGc -3'
miRNA:   3'- aGGUuUCCCaCCagCCCGCAGa--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 110571 0.67 0.788127
Target:  5'- aUCCuuAGGGUGGUCcgaacGuGCGUCccauuuuUGUGGa -3'
miRNA:   3'- -AGGuuUCCCACCAGc----C-CGCAG-------ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 11703 0.68 0.770929
Target:  5'- gUCCGugGAGGGgugGGUCGGGaggCUcCGGg -3'
miRNA:   3'- -AGGU--UUCCCa--CCAGCCCgcaGAcGCC- -5'
5474 5' -57.9 NC_001798.1 + 144355 0.68 0.761703
Target:  5'- cCCAGGGGcUGuUCGGGgGUCguagaUGCGGa -3'
miRNA:   3'- aGGUUUCCcACcAGCCCgCAG-----ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 83647 0.68 0.761703
Target:  5'- -gCGGAGGGgaugugcGGcucgCGGGCGUCUG-GGa -3'
miRNA:   3'- agGUUUCCCa------CCa---GCCCGCAGACgCC- -5'
5474 5' -57.9 NC_001798.1 + 108113 0.68 0.752367
Target:  5'- cCCGGucuguGGGUGGUgaUGGGgGUCcugGUGGg -3'
miRNA:   3'- aGGUUu----CCCACCA--GCCCgCAGa--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 125475 0.68 0.7334
Target:  5'- aCCAcGGucuGGUGGcgcUUGGGCGUC-GCGGu -3'
miRNA:   3'- aGGUuUC---CCACC---AGCCCGCAGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 31974 0.69 0.704345
Target:  5'- cCCAGGGGGUGGgggccaagaGGGCGgcgCcGCGc -3'
miRNA:   3'- aGGUUUCCCACCag-------CCCGCa--GaCGCc -5'
5474 5' -57.9 NC_001798.1 + 37538 0.69 0.694532
Target:  5'- cCCAAgccccAGGGUGGUguggCGGGacguguCGUCaUGCGGu -3'
miRNA:   3'- aGGUU-----UCCCACCA----GCCC------GCAG-ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 27026 0.69 0.68467
Target:  5'- -gCGGGcGGG-GGUCGGGCGg--GCGGc -3'
miRNA:   3'- agGUUU-CCCaCCAGCCCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 36417 0.69 0.68467
Target:  5'- gCCGGgcggggcgguGGGGcggGGUCGGG-GUCgcgGCGGg -3'
miRNA:   3'- aGGUU----------UCCCa--CCAGCCCgCAGa--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 29890 0.7 0.661843
Target:  5'- aCCAcccggcugcggguuGGGGGUGGUcgCGGGCGgugggcUCggggGCGGg -3'
miRNA:   3'- aGGU--------------UUCCCACCA--GCCCGC------AGa---CGCC- -5'
5474 5' -57.9 NC_001798.1 + 31034 0.7 0.644888
Target:  5'- gUCGGGcGGG-GGUCGGGCGggggUCggGCGGg -3'
miRNA:   3'- aGGUUU-CCCaCCAGCCCGC----AGa-CGCC- -5'
5474 5' -57.9 NC_001798.1 + 31001 0.7 0.644888
Target:  5'- gUCGGGcGGG-GGUCGGGCGggggUCggGCGGg -3'
miRNA:   3'- aGGUUU-CCCaCCAGCCCGC----AGa-CGCC- -5'
5474 5' -57.9 NC_001798.1 + 30968 0.7 0.644888
Target:  5'- gUCGGGcGGG-GGUCGGGCGggggUCggGCGGg -3'
miRNA:   3'- aGGUUU-CCCaCCAGCCCGC----AGa-CGCC- -5'
5474 5' -57.9 NC_001798.1 + 27329 0.7 0.624908
Target:  5'- --gAGGGGGUGG-CGGGgaacCGUgUGCGGg -3'
miRNA:   3'- aggUUUCCCACCaGCCC----GCAgACGCC- -5'
5474 5' -57.9 NC_001798.1 + 36794 0.7 0.614922
Target:  5'- -gCAcGGGGaccucGGUUGGGCGacgUCUGCGGu -3'
miRNA:   3'- agGUuUCCCa----CCAGCCCGC---AGACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.