miRNA display CGI


Results 21 - 40 of 252 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 134019 0.66 0.922192
Target:  5'- --cCCGCGcACGCgcgacugccuCCaCGCCCUGCUGUa -3'
miRNA:   3'- gaaGGCGUaUGUG----------GG-GUGGGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 14184 0.66 0.921641
Target:  5'- --cCCGCGUgggggcaGCACCUCGCCa-ACuCGCg -3'
miRNA:   3'- gaaGGCGUA-------UGUGGGGUGGgaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 78337 0.66 0.92053
Target:  5'- --aCCGCGga-GCUgguccggaccggggUCACCCUGCCGUg -3'
miRNA:   3'- gaaGGCGUaugUGG--------------GGUGGGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 119703 0.66 0.916567
Target:  5'- --aCCGUuuucuUGCuucCCCCGCCCacccCCGCa -3'
miRNA:   3'- gaaGGCGu----AUGu--GGGGUGGGau--GGCG- -5'
5475 3' -55.8 NC_001798.1 + 147234 0.66 0.916567
Target:  5'- ---gCGCGgGgGCCCCgggGCCCcggGCCGCg -3'
miRNA:   3'- gaagGCGUaUgUGGGG---UGGGa--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 8686 0.66 0.916567
Target:  5'- --aCCGCGUGCGCCgCCgucggcGCCUUaggACCGa -3'
miRNA:   3'- gaaGGCGUAUGUGG-GG------UGGGA---UGGCg -5'
5475 3' -55.8 NC_001798.1 + 27615 0.66 0.916567
Target:  5'- ---gCGCGggGCugCCCugCCgcCCGCc -3'
miRNA:   3'- gaagGCGUa-UGugGGGugGGauGGCG- -5'
5475 3' -55.8 NC_001798.1 + 30821 0.66 0.916567
Target:  5'- --cCCGCGgACgGCCCCGcgcuCCCUGUCGCu -3'
miRNA:   3'- gaaGGCGUaUG-UGGGGU----GGGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 92013 0.66 0.916567
Target:  5'- -aUCC-CAccCAUCCCACCCccaccagggGCCGCu -3'
miRNA:   3'- gaAGGcGUauGUGGGGUGGGa--------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 142013 0.66 0.916567
Target:  5'- --cUCGCGUuccCACCgCACCCggGCCGg -3'
miRNA:   3'- gaaGGCGUAu--GUGGgGUGGGa-UGGCg -5'
5475 3' -55.8 NC_001798.1 + 142530 0.66 0.916567
Target:  5'- -gUCCGCccgaccACACCCCccGCCC--CCGUa -3'
miRNA:   3'- gaAGGCGua----UGUGGGG--UGGGauGGCG- -5'
5475 3' -55.8 NC_001798.1 + 25092 0.66 0.915414
Target:  5'- --gCCGCcgggcgGCGCCCCGCgCCccccgaagaagaGCCGCg -3'
miRNA:   3'- gaaGGCGua----UGUGGGGUG-GGa-----------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 38018 0.66 0.914833
Target:  5'- gUUCCGCAgcugaaugggcccgUGCACCgcagCCGCCCcccaCGCu -3'
miRNA:   3'- gAAGGCGU--------------AUGUGG----GGUGGGaug-GCG- -5'
5475 3' -55.8 NC_001798.1 + 121274 0.66 0.914251
Target:  5'- -gUCCGCccucGUGCGCggCCGCCCcgacgguggggcgGCCGCg -3'
miRNA:   3'- gaAGGCG----UAUGUGg-GGUGGGa------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 73338 0.66 0.910706
Target:  5'- --gCCGUcgACGCgCCCGgCggGCCGCg -3'
miRNA:   3'- gaaGGCGuaUGUG-GGGUgGgaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 105437 0.66 0.910706
Target:  5'- --cCUGCA-GCACUgCCGCCCgcuCCGCc -3'
miRNA:   3'- gaaGGCGUaUGUGG-GGUGGGau-GGCG- -5'
5475 3' -55.8 NC_001798.1 + 15544 0.66 0.910706
Target:  5'- -gUUCGUGUGCccgGCCCCggGCgUUGCCGCc -3'
miRNA:   3'- gaAGGCGUAUG---UGGGG--UGgGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 75808 0.66 0.910706
Target:  5'- --cCCGC---CACCCCgacgcACCCggaGCCGCu -3'
miRNA:   3'- gaaGGCGuauGUGGGG-----UGGGa--UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 92579 0.66 0.910706
Target:  5'- -cUUCGCGgacuacGCGCCCCGgCCCUGCg-- -3'
miRNA:   3'- gaAGGCGUa-----UGUGGGGU-GGGAUGgcg -5'
5475 3' -55.8 NC_001798.1 + 51496 0.66 0.910706
Target:  5'- --gCUGCAggcgGCAUUCC-CCCUggACCGCc -3'
miRNA:   3'- gaaGGCGUa---UGUGGGGuGGGA--UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.