miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 5' -58.9 NC_001798.1 + 149731 0.66 0.801426
Target:  5'- -gGCCCCCGCg-GCGCagcaGCGCGGg -3'
miRNA:   3'- cgUGGGGGCGgaUGCGcacaUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 5356 0.66 0.801426
Target:  5'- cGCGgCCCCGCCccgACGCcc--GCGCGu -3'
miRNA:   3'- -CGUgGGGGCGGa--UGCGcacaUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 121487 0.66 0.801426
Target:  5'- cGUcUCCCUGCCgguCGCGUGcgACGCc- -3'
miRNA:   3'- -CGuGGGGGCGGau-GCGCACa-UGCGcu -5'
5475 5' -58.9 NC_001798.1 + 91964 0.66 0.792684
Target:  5'- gGCcCCCCCGUCcgGCGCGauccgGUG-GCGGg -3'
miRNA:   3'- -CGuGGGGGCGGa-UGCGCa----CAUgCGCU- -5'
5475 5' -58.9 NC_001798.1 + 74031 0.66 0.792684
Target:  5'- aGUACCCggcggcgcgcggCgGCCUGCguuGCGUGUuuuCGCGGg -3'
miRNA:   3'- -CGUGGG------------GgCGGAUG---CGCACAu--GCGCU- -5'
5475 5' -58.9 NC_001798.1 + 96413 0.66 0.791802
Target:  5'- uCACCCUggaguUGCUccuggagUACGCGUG-GCGCGAg -3'
miRNA:   3'- cGUGGGG-----GCGG-------AUGCGCACaUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 90633 0.67 0.783806
Target:  5'- cCACCUCCGCCU-CGaaGUGgucCGCGGa -3'
miRNA:   3'- cGUGGGGGCGGAuGCg-CACau-GCGCU- -5'
5475 5' -58.9 NC_001798.1 + 146015 0.67 0.783806
Target:  5'- cCACCCCCcaaacaGCCaagGCGCGgUGggggGCGUGGu -3'
miRNA:   3'- cGUGGGGG------CGGa--UGCGC-ACa---UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 66750 0.67 0.783806
Target:  5'- gGCGCCacguCCGCCUggggugcgGCgGCGUGggcCGCGGa -3'
miRNA:   3'- -CGUGGg---GGCGGA--------UG-CGCACau-GCGCU- -5'
5475 5' -58.9 NC_001798.1 + 124136 0.67 0.783806
Target:  5'- cGCGCCCCCGCCgugGCGg--AgGCc- -3'
miRNA:   3'- -CGUGGGGGCGGaugCGCacaUgCGcu -5'
5475 5' -58.9 NC_001798.1 + 138250 0.67 0.783806
Target:  5'- uGCcCCCCCGCCUcguccaaguagGCGCGUac-CGUGu -3'
miRNA:   3'- -CGuGGGGGCGGA-----------UGCGCAcauGCGCu -5'
5475 5' -58.9 NC_001798.1 + 3248 0.67 0.7748
Target:  5'- aGCACCCCCGCg-GCGCc-GUAgccgGCGGg -3'
miRNA:   3'- -CGUGGGGGCGgaUGCGcaCAUg---CGCU- -5'
5475 5' -58.9 NC_001798.1 + 25729 0.67 0.7748
Target:  5'- gGCGCCCCCGaCgucucgGCGC-UGgGCGCGc -3'
miRNA:   3'- -CGUGGGGGCgGa-----UGCGcACaUGCGCu -5'
5475 5' -58.9 NC_001798.1 + 62311 0.67 0.7748
Target:  5'- cGCGCUCCCuggagagcauGCCUACGC-UGacCGCGGc -3'
miRNA:   3'- -CGUGGGGG----------CGGAUGCGcACauGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 143123 0.67 0.7748
Target:  5'- gGUGCUCCgCGCUUGCGC-UGgcGCGCGGc -3'
miRNA:   3'- -CGUGGGG-GCGGAUGCGcACa-UGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 58683 0.67 0.7748
Target:  5'- cCACCgCCGCCgucagggcCGCGgcgGCGCGGg -3'
miRNA:   3'- cGUGGgGGCGGau------GCGCacaUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 122428 0.67 0.7748
Target:  5'- -gGCCUgugCCGCCgaGCGCGUcGUGCGCc- -3'
miRNA:   3'- cgUGGG---GGCGGa-UGCGCA-CAUGCGcu -5'
5475 5' -58.9 NC_001798.1 + 34005 0.67 0.7748
Target:  5'- --cCCCCCGCCcGCGCcc--ACGCGGu -3'
miRNA:   3'- cguGGGGGCGGaUGCGcacaUGCGCU- -5'
5475 5' -58.9 NC_001798.1 + 120233 0.67 0.765673
Target:  5'- -gGCCCCCGCCgaggccaggAUGCGgugcaucucgGUAUGCa- -3'
miRNA:   3'- cgUGGGGGCGGa--------UGCGCa---------CAUGCGcu -5'
5475 5' -58.9 NC_001798.1 + 65678 0.67 0.765673
Target:  5'- cGCACgCCCCGgUgggGCGCGUgcucuguuuguuGUGCGCc- -3'
miRNA:   3'- -CGUG-GGGGCgGa--UGCGCA------------CAUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.