miRNA display CGI


Results 21 - 40 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 3' -55.6 NC_001798.1 + 106837 0.66 0.933547
Target:  5'- cGCGCAgcUGAUgGAGGCccugGGGCCgCGCGa -3'
miRNA:   3'- aCGUGU--GCUGgUUUUG----CCUGGgGCGC- -5'
5476 3' -55.6 NC_001798.1 + 150608 0.66 0.933547
Target:  5'- cGCugAUGACUAugggGGGCuccuGGGCCgCGCGg -3'
miRNA:   3'- aCGugUGCUGGU----UUUG----CCUGGgGCGC- -5'
5476 3' -55.6 NC_001798.1 + 153155 0.66 0.933547
Target:  5'- cGCGCA-GACCuucgGAGCuccgGGGCUCCGCc -3'
miRNA:   3'- aCGUGUgCUGGu---UUUG----CCUGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 32030 0.66 0.932039
Target:  5'- gGCGacCGCGGCC---ACGGGCCgcucgccccggcguCCGCGg -3'
miRNA:   3'- aCGU--GUGCUGGuuuUGCCUGG--------------GGCGC- -5'
5476 3' -55.6 NC_001798.1 + 16215 0.66 0.92896
Target:  5'- cGCACGCG-CCGccuguggggGGGCGGuggggccggggcccuCCCCGCc -3'
miRNA:   3'- aCGUGUGCuGGU---------UUUGCCu--------------GGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 69210 0.66 0.928438
Target:  5'- gUGcCGCAgGGCCAAAAggagcgcccCGGccgGCUCCGCGu -3'
miRNA:   3'- -AC-GUGUgCUGGUUUU---------GCC---UGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 92543 0.66 0.928438
Target:  5'- --gACGCGGCUcugcGAGCGGGCgcgCCCGCa -3'
miRNA:   3'- acgUGUGCUGGu---UUUGCCUG---GGGCGc -5'
5476 3' -55.6 NC_001798.1 + 106734 0.66 0.928438
Target:  5'- aGC-CAUcGCCAGGGggccucCGGAgCCCGCGg -3'
miRNA:   3'- aCGuGUGcUGGUUUU------GCCUgGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 25603 0.66 0.928438
Target:  5'- gGC-CGCGcCgGGGGCGGGCCCCcccCGg -3'
miRNA:   3'- aCGuGUGCuGgUUUUGCCUGGGGc--GC- -5'
5476 3' -55.6 NC_001798.1 + 43102 0.66 0.928438
Target:  5'- cGCGucCGCGACCAcggucgcuuccGGCGGGCgcgcguCCCGCGu -3'
miRNA:   3'- aCGU--GUGCUGGUu----------UUGCCUG------GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 56861 0.66 0.928438
Target:  5'- gUGUAuCugGGCCGGAuCGaACaCCCGCGa -3'
miRNA:   3'- -ACGU-GugCUGGUUUuGCcUG-GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 83314 0.66 0.928438
Target:  5'- gUGCGCuuaaGACCGAAcgaGGGCCgcagccauucggCCGCGg -3'
miRNA:   3'- -ACGUGug--CUGGUUUug-CCUGG------------GGCGC- -5'
5476 3' -55.6 NC_001798.1 + 96356 0.66 0.928438
Target:  5'- gGCACcuGCGGCCGGGGCuGGaggcucagGCCgCCGCc -3'
miRNA:   3'- aCGUG--UGCUGGUUUUG-CC--------UGG-GGCGc -5'
5476 3' -55.6 NC_001798.1 + 137674 0.66 0.928438
Target:  5'- gGC-CACGAagGAGGCGaucGCCCCGCu -3'
miRNA:   3'- aCGuGUGCUggUUUUGCc--UGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 13765 0.66 0.928438
Target:  5'- aUGCAgcuUAUGACCGAAcaccacACcGACCCCGgGu -3'
miRNA:   3'- -ACGU---GUGCUGGUUU------UGcCUGGGGCgC- -5'
5476 3' -55.6 NC_001798.1 + 145804 0.66 0.928438
Target:  5'- cGCGgGCGGCagaAAcGCGGGCgCgGCGg -3'
miRNA:   3'- aCGUgUGCUGg--UUuUGCCUGgGgCGC- -5'
5476 3' -55.6 NC_001798.1 + 77552 0.66 0.927914
Target:  5'- cUGCACgccgaagggACGGCCGGggaccauucccccAGCGGgcgcGCCCUGCa -3'
miRNA:   3'- -ACGUG---------UGCUGGUU-------------UUGCC----UGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 103525 0.66 0.925259
Target:  5'- cGUACAgGGCCAAaaacccggccacguaGAUGGGCaCCGCc -3'
miRNA:   3'- aCGUGUgCUGGUU---------------UUGCCUGgGGCGc -5'
5476 3' -55.6 NC_001798.1 + 146860 0.66 0.923093
Target:  5'- cGcCGC-CGAUCGAGAgGGACUCCGg- -3'
miRNA:   3'- aC-GUGuGCUGGUUUUgCCUGGGGCgc -5'
5476 3' -55.6 NC_001798.1 + 106517 0.66 0.923093
Target:  5'- cGCGCGUGGCCucgaacAGCGagcGACCCUGCa -3'
miRNA:   3'- aCGUGUGCUGGuu----UUGC---CUGGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.