Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5476 | 5' | -53.4 | NC_001798.1 | + | 24577 | 0.69 | 0.894904 |
Target: 5'- gCGCGCGGAGgcg---GG-CCGCGUg- -3' miRNA: 3'- -GCGCGCCUCaauaaaUCaGGCGCGga -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 28208 | 0.69 | 0.894234 |
Target: 5'- gGCGcCGGAGgccccgcacgCCGCGCCUg -3' miRNA: 3'- gCGC-GCCUCaauaaauca-GGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 134467 | 0.69 | 0.888096 |
Target: 5'- gGCGCGcGGUUGgcgUGGg-CGCGCCUg -3' miRNA: 3'- gCGCGCcUCAAUaa-AUCagGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 34104 | 0.69 | 0.881769 |
Target: 5'- gCGCGUGGGGgcgg-UGGgcguacgggcccgacCCGCGCCUg -3' miRNA: 3'- -GCGCGCCUCaauaaAUCa--------------GGCGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 153003 | 0.7 | 0.864769 |
Target: 5'- gGCGCGGGGcgGUcgccggggcggAGUCCGgGCCc -3' miRNA: 3'- gCGCGCCUCaaUAaa---------UCAGGCgCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 27547 | 0.7 | 0.834216 |
Target: 5'- gCGCGCGGGGggAgg-GG-CgGCGCCc -3' miRNA: 3'- -GCGCGCCUCaaUaaaUCaGgCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 39556 | 0.71 | 0.815251 |
Target: 5'- gGCGcCGGGGccgucc-GUCCGCGCCg -3' miRNA: 3'- gCGC-GCCUCaauaaauCAGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 141487 | 0.71 | 0.795456 |
Target: 5'- cCGCGCGGGGggcugauGUCCGUgGCCc -3' miRNA: 3'- -GCGCGCCUCaauaaauCAGGCG-CGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 31656 | 0.71 | 0.793619 |
Target: 5'- aGCGCGGAcgcggccgGGcCCGCGCCg -3' miRNA: 3'- gCGCGCCUcaauaaa-UCaGGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 80151 | 0.71 | 0.780592 |
Target: 5'- aCGCaGCGGAGUccaugcUGUUc-GUCCaGCGCCUg -3' miRNA: 3'- -GCG-CGCCUCA------AUAAauCAGG-CGCGGA- -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 39625 | 0.72 | 0.741979 |
Target: 5'- gCGCcgGCGGGGUuuuggUGUggAGUCgGCGCCg -3' miRNA: 3'- -GCG--CGCCUCA-----AUAaaUCAGgCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 147233 | 0.73 | 0.711947 |
Target: 5'- aGCGCGGGGgccccgGGgccccgggCCGCGCCg -3' miRNA: 3'- gCGCGCCUCaauaaaUCa-------GGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 50568 | 0.75 | 0.587984 |
Target: 5'- aCGCGCGGGGUgggg-GGUgUGUGCCg -3' miRNA: 3'- -GCGCGCCUCAauaaaUCAgGCGCGGa -5' |
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5476 | 5' | -53.4 | NC_001798.1 | + | 79389 | 0.75 | 0.577679 |
Target: 5'- gGCGCGGGcgcgg--AGUCCGCGCCc -3' miRNA: 3'- gCGCGCCUcaauaaaUCAGGCGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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