miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5477 3' -54.2 NC_001798.1 + 91097 0.66 0.958267
Target:  5'- gGCCGUCGuGGACc---CCGGUGCGc- -3'
miRNA:   3'- -UGGUAGUuCCUGcagaGGCCACGUag -5'
5477 3' -54.2 NC_001798.1 + 45182 0.66 0.954409
Target:  5'- cACCAUCGacGGGGcCGUUg-CGGcGCAUCg -3'
miRNA:   3'- -UGGUAGU--UCCU-GCAGagGCCaCGUAG- -5'
5477 3' -54.2 NC_001798.1 + 46475 0.66 0.950315
Target:  5'- uGCCAgCGGGGACGgcgccaacugCggaaaCCGGUGCAg- -3'
miRNA:   3'- -UGGUaGUUCCUGCa---------Ga----GGCCACGUag -5'
5477 3' -54.2 NC_001798.1 + 112651 0.66 0.945984
Target:  5'- gGCCuuUUAAGGACaaCUCCGGgcGCAUUc -3'
miRNA:   3'- -UGGu-AGUUCCUGcaGAGGCCa-CGUAG- -5'
5477 3' -54.2 NC_001798.1 + 9127 0.66 0.941412
Target:  5'- cGCCG-CGAGGugGUCUgCGGcacGCGg- -3'
miRNA:   3'- -UGGUaGUUCCugCAGAgGCCa--CGUag -5'
5477 3' -54.2 NC_001798.1 + 117667 0.67 0.931535
Target:  5'- aACCcgCGGGGACG-CgcggCCGGcgGCGUg -3'
miRNA:   3'- -UGGuaGUUCCUGCaGa---GGCCa-CGUAg -5'
5477 3' -54.2 NC_001798.1 + 37076 0.67 0.926229
Target:  5'- cACCGUacucugCAGGGACGUCgCCGGUuggGCuuguuUCa -3'
miRNA:   3'- -UGGUA------GUUCCUGCAGaGGCCA---CGu----AG- -5'
5477 3' -54.2 NC_001798.1 + 103322 0.67 0.914877
Target:  5'- gGCCGucUCGAGGACGcgCUCCaGcUGCAc- -3'
miRNA:   3'- -UGGU--AGUUCCUGCa-GAGGcC-ACGUag -5'
5477 3' -54.2 NC_001798.1 + 47515 0.68 0.89602
Target:  5'- gAUCcgCAcGGGCGUCcCCGGUGUcUCc -3'
miRNA:   3'- -UGGuaGUuCCUGCAGaGGCCACGuAG- -5'
5477 3' -54.2 NC_001798.1 + 62223 0.68 0.89602
Target:  5'- uCCGUCGAGGACGUgCUgCGcGaGUGUCa -3'
miRNA:   3'- uGGUAGUUCCUGCA-GAgGC-CaCGUAG- -5'
5477 3' -54.2 NC_001798.1 + 92759 0.68 0.885086
Target:  5'- aACCAUCGGGGACGcggagguucaccgcaUC-CCcGUGUAUCc -3'
miRNA:   3'- -UGGUAGUUCCUGC---------------AGaGGcCACGUAG- -5'
5477 3' -54.2 NC_001798.1 + 150633 0.69 0.867584
Target:  5'- gGCCGcgCGGGGcUGUCUCgCGGgggGCGUCc -3'
miRNA:   3'- -UGGUa-GUUCCuGCAGAG-GCCa--CGUAG- -5'
5477 3' -54.2 NC_001798.1 + 22777 0.7 0.800713
Target:  5'- -----gGGGGACGUCUCCGG-GCcgCg -3'
miRNA:   3'- ugguagUUCCUGCAGAGGCCaCGuaG- -5'
5477 3' -54.2 NC_001798.1 + 149241 0.72 0.672881
Target:  5'- gGCCcgCGGGGGCGUCgccggCCGGcGCGg- -3'
miRNA:   3'- -UGGuaGUUCCUGCAGa----GGCCaCGUag -5'
5477 3' -54.2 NC_001798.1 + 56833 0.75 0.517872
Target:  5'- aGCCGUCGGGGuucuccuGCGUCUgCGuGUGUAUCu -3'
miRNA:   3'- -UGGUAGUUCC-------UGCAGAgGC-CACGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.