miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5478 3' -50.8 NC_001798.1 + 72857 0.66 0.995321
Target:  5'- cGGGCCCCGAgcg-GGUggCCGaGUucguucaGGAa -3'
miRNA:   3'- -CCCGGGGUUaguaUCAaaGGC-CA-------UCU- -5'
5478 3' -50.8 NC_001798.1 + 57726 0.66 0.993779
Target:  5'- cGGCCCCcg-CGaAGga-CCGGUGGGc -3'
miRNA:   3'- cCCGGGGuuaGUaUCaaaGGCCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 18061 0.67 0.990539
Target:  5'- -cGCCCCuccgCGUAGUccUCCgGGUAGGc -3'
miRNA:   3'- ccCGGGGuua-GUAUCAa-AGG-CCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 89686 0.67 0.990539
Target:  5'- cGGGCCCgGAggCGUAGUaggcggggaugUCgCGGUAGc -3'
miRNA:   3'- -CCCGGGgUUa-GUAUCAa----------AG-GCCAUCu -5'
5478 3' -50.8 NC_001798.1 + 144802 0.67 0.989204
Target:  5'- aGGGCCCgGcgcGUCGUuGUUUCCugGGUGu- -3'
miRNA:   3'- -CCCGGGgU---UAGUAuCAAAGG--CCAUcu -5'
5478 3' -50.8 NC_001798.1 + 91962 0.67 0.9861
Target:  5'- cGGGCCCCcccGUCcgGcgcgaUCCGGUGGc -3'
miRNA:   3'- -CCCGGGGu--UAGuaUcaa--AGGCCAUCu -5'
5478 3' -50.8 NC_001798.1 + 4072 0.68 0.977895
Target:  5'- cGGCCCgCGGUCGccgcgGGggUCCGGgccgGGGc -3'
miRNA:   3'- cCCGGG-GUUAGUa----UCaaAGGCCa---UCU- -5'
5478 3' -50.8 NC_001798.1 + 104660 0.68 0.977895
Target:  5'- aGGGCCCCGugcUCGUAGcggccgCCGGc--- -3'
miRNA:   3'- -CCCGGGGUu--AGUAUCaaa---GGCCaucu -5'
5478 3' -50.8 NC_001798.1 + 73089 0.68 0.975377
Target:  5'- gGGGCCCCuggGUCAgccgacGGUggUUCCGGa--- -3'
miRNA:   3'- -CCCGGGGu--UAGUa-----UCA--AAGGCCaucu -5'
5478 3' -50.8 NC_001798.1 + 66841 0.69 0.966572
Target:  5'- cGGCgCCCAGgccggGGUUUCCGG-GGAg -3'
miRNA:   3'- cCCG-GGGUUagua-UCAAAGGCCaUCU- -5'
5478 3' -50.8 NC_001798.1 + 74857 0.69 0.966572
Target:  5'- cGGGUCCUGGagGUGGgggcagugCCGGUGGGu -3'
miRNA:   3'- -CCCGGGGUUagUAUCaaa-----GGCCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 57601 0.69 0.963197
Target:  5'- cGGGCCCaCcGUUAUcGUgcgUCCGGgGGAg -3'
miRNA:   3'- -CCCGGG-GuUAGUAuCAa--AGGCCaUCU- -5'
5478 3' -50.8 NC_001798.1 + 68541 0.69 0.959592
Target:  5'- cGGCCCCGugaAUCGUguuGGUUaUCCGG-AGGc -3'
miRNA:   3'- cCCGGGGU---UAGUA---UCAA-AGGCCaUCU- -5'
5478 3' -50.8 NC_001798.1 + 22882 0.69 0.95575
Target:  5'- cGGCCCgGGUUcgGGUggCaCGGUGGGc -3'
miRNA:   3'- cCCGGGgUUAGuaUCAaaG-GCCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 15438 0.71 0.908117
Target:  5'- gGGGCCCCGgaGUCGUGGggcggggggucgcgUgGGUAGAc -3'
miRNA:   3'- -CCCGGGGU--UAGUAUCaaa-----------GgCCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 55278 0.73 0.852472
Target:  5'- cGGCCCCAccGUCucGGUUUCCGGc--- -3'
miRNA:   3'- cCCGGGGU--UAGuaUCAAAGGCCaucu -5'
5478 3' -50.8 NC_001798.1 + 38439 0.74 0.781504
Target:  5'- gGGGCCCCA--CAUuua-UCCGGUGGGu -3'
miRNA:   3'- -CCCGGGGUuaGUAucaaAGGCCAUCU- -5'
5478 3' -50.8 NC_001798.1 + 108108 0.77 0.627957
Target:  5'- uGGGCCCCGGUCuguggGUGGUgaugggggUCCuGGUGGGc -3'
miRNA:   3'- -CCCGGGGUUAG-----UAUCAa-------AGG-CCAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.