miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5478 5' -55.5 NC_001798.1 + 29963 0.66 0.916567
Target:  5'- cGG-C-CCGCuuAAGCGgucgggggACCCCCgUGGGCc -3'
miRNA:   3'- -CCaGaGGUG--UUUGU--------UGGGGGgACCCG- -5'
5478 5' -55.5 NC_001798.1 + 134139 0.67 0.910706
Target:  5'- cGG-CUCCcccgACGucuCGGCCCCCg-GGGCc -3'
miRNA:   3'- -CCaGAGG----UGUuu-GUUGGGGGgaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 79483 0.67 0.910706
Target:  5'- aGGUCgacCCGCAGcuGCuGCgCCgCCgGGGCg -3'
miRNA:   3'- -CCAGa--GGUGUU--UGuUGgGG-GGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 2798 0.67 0.90461
Target:  5'- cGGgCUCCGC-GGCAGCgCCgggCCCaGGGCc -3'
miRNA:   3'- -CCaGAGGUGuUUGUUG-GG---GGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 7499 0.67 0.90461
Target:  5'- cGGUCcCCu---AC-GCCCCCCUcGGCa -3'
miRNA:   3'- -CCAGaGGuguuUGuUGGGGGGAcCCG- -5'
5478 5' -55.5 NC_001798.1 + 98590 0.67 0.90461
Target:  5'- cGUCggcggCCccgGCGgccccGGCGGCCCCCCgcgccucGGGCg -3'
miRNA:   3'- cCAGa----GG---UGU-----UUGUUGGGGGGa------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 108556 0.67 0.898281
Target:  5'- cGcCUCCGCGcuguuGCggUCCCgggCCUGGGUa -3'
miRNA:   3'- cCaGAGGUGUu----UGuuGGGG---GGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 54236 0.67 0.898281
Target:  5'- -uUCcCCACGAugAccGCCCCgagCUGGGCc -3'
miRNA:   3'- ccAGaGGUGUUugU--UGGGGg--GACCCG- -5'
5478 5' -55.5 NC_001798.1 + 32771 0.67 0.891723
Target:  5'- uGGUCUCgggagcagggCGCGcccgcgccggccGGCGACgCCCCCgcGGGCc -3'
miRNA:   3'- -CCAGAG----------GUGU------------UUGUUG-GGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 89449 0.67 0.891723
Target:  5'- uGUCgaggCCcCGA--AACCgCCCCUGGGUg -3'
miRNA:   3'- cCAGa---GGuGUUugUUGG-GGGGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 126571 0.67 0.891723
Target:  5'- --cCUCCGCuacACGACCcuggagauCCCCgGGGCc -3'
miRNA:   3'- ccaGAGGUGuu-UGUUGG--------GGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 140222 0.67 0.891723
Target:  5'- gGGUCgCCGaccCAGACGGCCUCgCUGGaGUc -3'
miRNA:   3'- -CCAGaGGU---GUUUGUUGGGGgGACC-CG- -5'
5478 5' -55.5 NC_001798.1 + 29487 0.67 0.891723
Target:  5'- uGGUCcCCGgGGACGggGCCgCCCCgagagGGGg -3'
miRNA:   3'- -CCAGaGGUgUUUGU--UGG-GGGGa----CCCg -5'
5478 5' -55.5 NC_001798.1 + 23808 0.67 0.884939
Target:  5'- uGG-C-CCGgGGcCGGCCCCCCgcccccgGGGCg -3'
miRNA:   3'- -CCaGaGGUgUUuGUUGGGGGGa------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 48347 0.67 0.884939
Target:  5'- cGUCgaCGCGAccGCGGCCgCCCgGGGCc -3'
miRNA:   3'- cCAGagGUGUU--UGUUGGgGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 117381 0.67 0.884939
Target:  5'- cGUCgcggCCACGGgcaccguccGCAACCCCgUuacggacaUGGGCa -3'
miRNA:   3'- cCAGa---GGUGUU---------UGUUGGGGgG--------ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 61861 0.67 0.884939
Target:  5'- cGGg--CCGCcggcccagcccGGCGGCCCCCUcGGGCg -3'
miRNA:   3'- -CCagaGGUGu----------UUGUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 94962 0.67 0.884248
Target:  5'- gGGUCccgCCguccccccagcguGCAGGCGGCggCCgCCUGGGCc -3'
miRNA:   3'- -CCAGa--GG-------------UGUUUGUUG--GGgGGACCCG- -5'
5478 5' -55.5 NC_001798.1 + 130226 0.67 0.877933
Target:  5'- gGGUUUCCGCG--UAGCCCggguCUCcGGGCg -3'
miRNA:   3'- -CCAGAGGUGUuuGUUGGG----GGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 21477 0.67 0.877933
Target:  5'- cGUCcCCcCGGcCGGCCCCCC-GGGUc -3'
miRNA:   3'- cCAGaGGuGUUuGUUGGGGGGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.