miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5479 3' -64.3 NC_001798.1 + 147930 0.66 0.525331
Target:  5'- ----gGGCCCGUacgcccaccGCccccaCGCGCCGGUCAc -3'
miRNA:   3'- uuugaCCGGGCG---------CGa----GCGCGGCCGGU- -5'
5479 3' -64.3 NC_001798.1 + 71967 0.66 0.525331
Target:  5'- -uGCUGGCCCugguggucGgGgaCGCGCUgagGGCCAc -3'
miRNA:   3'- uuUGACCGGG--------CgCgaGCGCGG---CCGGU- -5'
5479 3' -64.3 NC_001798.1 + 52033 0.66 0.525331
Target:  5'- -uACUGGCCCggggugcgcGCGCUCcugggGCGCgacugucgcgUGGCCGc -3'
miRNA:   3'- uuUGACCGGG---------CGCGAG-----CGCG----------GCCGGU- -5'
5479 3' -64.3 NC_001798.1 + 4068 0.66 0.525331
Target:  5'- cAGGC-GGCCCGCGgUCGCcGCgGGgguCCGg -3'
miRNA:   3'- -UUUGaCCGGGCGCgAGCG-CGgCC---GGU- -5'
5479 3' -64.3 NC_001798.1 + 88178 0.66 0.525331
Target:  5'- uGGACgGGaCCUGCGCgCG-GCgGGCCAu -3'
miRNA:   3'- -UUUGaCC-GGGCGCGaGCgCGgCCGGU- -5'
5479 3' -64.3 NC_001798.1 + 2792 0.66 0.525331
Target:  5'- cAGGCgcgGGCuCCGCGgcaGCGCCgGGCCc -3'
miRNA:   3'- -UUUGa--CCG-GGCGCgagCGCGG-CCGGu -5'
5479 3' -64.3 NC_001798.1 + 4348 0.66 0.525331
Target:  5'- gAGGC-GGCCgaGCGCcggcggggggCGCGCCGGCg- -3'
miRNA:   3'- -UUUGaCCGGg-CGCGa---------GCGCGGCCGgu -5'
5479 3' -64.3 NC_001798.1 + 26143 0.66 0.525331
Target:  5'- -cGCUGGugcccaugucCCCGCGCgaguaccgcCGCGCCGuGCUc -3'
miRNA:   3'- uuUGACC----------GGGCGCGa--------GCGCGGC-CGGu -5'
5479 3' -64.3 NC_001798.1 + 83888 0.66 0.525331
Target:  5'- ----cGGCCCggGCGCUCcggaagagugguGCGCCGccGCCAc -3'
miRNA:   3'- uuugaCCGGG--CGCGAG------------CGCGGC--CGGU- -5'
5479 3' -64.3 NC_001798.1 + 132131 0.66 0.525331
Target:  5'- cAGGC-GGCCCuGCGC-CGCcggggGCCGGCgGg -3'
miRNA:   3'- -UUUGaCCGGG-CGCGaGCG-----CGGCCGgU- -5'
5479 3' -64.3 NC_001798.1 + 111724 0.66 0.515922
Target:  5'- uGACggUGGCCCGCuugGCcccCGCGCCcccGGCCc -3'
miRNA:   3'- uUUG--ACCGGGCG---CGa--GCGCGG---CCGGu -5'
5479 3' -64.3 NC_001798.1 + 116716 0.66 0.515922
Target:  5'- cGACgGGCCCGCcauGCUCacgcugcagGUGCUGGCgCAc -3'
miRNA:   3'- uUUGaCCGGGCG---CGAG---------CGCGGCCG-GU- -5'
5479 3' -64.3 NC_001798.1 + 100383 0.66 0.50658
Target:  5'- cGAGCUGcGCCucacccgcgaCGCGCUCGaGCCgugcaccgugGGCCAc -3'
miRNA:   3'- -UUUGAC-CGG----------GCGCGAGCgCGG----------CCGGU- -5'
5479 3' -64.3 NC_001798.1 + 2118 0.66 0.50658
Target:  5'- ----cGGCCCGCGgccaggucCUCGC-CCGGCa- -3'
miRNA:   3'- uuugaCCGGGCGC--------GAGCGcGGCCGgu -5'
5479 3' -64.3 NC_001798.1 + 28669 0.66 0.50658
Target:  5'- ----cGGCgCCGCGUg-GCGgCGGCCGa -3'
miRNA:   3'- uuugaCCG-GGCGCGagCGCgGCCGGU- -5'
5479 3' -64.3 NC_001798.1 + 35198 0.66 0.50658
Target:  5'- cGGCgGGCCCcuGCGUUCGUugcuGCCGcGCCc -3'
miRNA:   3'- uUUGaCCGGG--CGCGAGCG----CGGC-CGGu -5'
5479 3' -64.3 NC_001798.1 + 47865 0.66 0.50658
Target:  5'- ----gGGCCC-CGUggGCGCCGGCgGg -3'
miRNA:   3'- uuugaCCGGGcGCGagCGCGGCCGgU- -5'
5479 3' -64.3 NC_001798.1 + 102200 0.66 0.50658
Target:  5'- --cCUGGCgCGCGg-CGCGCCGGg-- -3'
miRNA:   3'- uuuGACCGgGCGCgaGCGCGGCCggu -5'
5479 3' -64.3 NC_001798.1 + 102904 0.66 0.50658
Target:  5'- ----cGGCCUGcCGC-CGcCGCuCGGCCAc -3'
miRNA:   3'- uuugaCCGGGC-GCGaGC-GCG-GCCGGU- -5'
5479 3' -64.3 NC_001798.1 + 139331 0.66 0.50658
Target:  5'- -cGCcgGcGCCCGCGCgCGCuGUgCGGCCAu -3'
miRNA:   3'- uuUGa-C-CGGGCGCGaGCG-CG-GCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.