miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5479 5' -59.5 NC_001798.1 + 150836 0.66 0.766332
Target:  5'- --cGGGGcGCcagGGGGCGcCGGUCGgguCGCg -3'
miRNA:   3'- auaCCCC-CG---CCCCGCaGUUAGU---GCGa -5'
5479 5' -59.5 NC_001798.1 + 148089 0.66 0.760721
Target:  5'- --cGGGGGcCGGGGCcgcuagggaaagguaGgCAcgCGCGCg -3'
miRNA:   3'- auaCCCCC-GCCCCG---------------CaGUuaGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 151173 0.66 0.756958
Target:  5'- --cGGGGGgGuGGGCGaCAGg-GCGCg -3'
miRNA:   3'- auaCCCCCgC-CCCGCaGUUagUGCGa -5'
5479 5' -59.5 NC_001798.1 + 31981 0.66 0.747477
Target:  5'- gGUGGGGGCcaagaGGGCGgcgc-CGCGCc -3'
miRNA:   3'- aUACCCCCGc----CCCGCaguuaGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 15187 0.66 0.747477
Target:  5'- uUcgGGGGGUGGGGgGg----CugGCg -3'
miRNA:   3'- -AuaCCCCCGCCCCgCaguuaGugCGa -5'
5479 5' -59.5 NC_001798.1 + 133762 0.66 0.747477
Target:  5'- cGUGGGGGCGcugcuuGCG-CAcgCACGCc -3'
miRNA:   3'- aUACCCCCGCcc----CGCaGUuaGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 2642 0.66 0.747477
Target:  5'- ---cGGGGCGGGGC-UC--UUGCGCUu -3'
miRNA:   3'- auacCCCCGCCCCGcAGuuAGUGCGA- -5'
5479 5' -59.5 NC_001798.1 + 83575 0.66 0.746523
Target:  5'- -cUGGGGcggugaaacuGCGGGGCGgccaucgggaccuUgGGUCGCGCc -3'
miRNA:   3'- auACCCC----------CGCCCCGC-------------AgUUAGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 10322 0.66 0.737898
Target:  5'- -uUGGGGGgGGaacgcugaccGGCGUgCGuucGUCACGCc -3'
miRNA:   3'- auACCCCCgCC----------CCGCA-GU---UAGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 36039 0.66 0.737898
Target:  5'- --gGGGGGUGGcGGCGgUggUCgGCGUg -3'
miRNA:   3'- auaCCCCCGCC-CCGCaGuuAG-UGCGa -5'
5479 5' -59.5 NC_001798.1 + 36934 0.66 0.737898
Target:  5'- -uUGGGGGCuGGGCaugccCAcgCAUGCa -3'
miRNA:   3'- auACCCCCGcCCCGca---GUuaGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 68518 0.66 0.737898
Target:  5'- --cGGGGGagGGGGCGUCAuGUCcuCGg- -3'
miRNA:   3'- auaCCCCCg-CCCCGCAGU-UAGu-GCga -5'
5479 5' -59.5 NC_001798.1 + 66764 0.66 0.728229
Target:  5'- -cUGGGGuGCGGcGGCGUgGGcCGCGg- -3'
miRNA:   3'- auACCCC-CGCC-CCGCAgUUaGUGCga -5'
5479 5' -59.5 NC_001798.1 + 154390 0.66 0.728229
Target:  5'- -uUGGGGG-GGGGCG-CGAagGCGg- -3'
miRNA:   3'- auACCCCCgCCCCGCaGUUagUGCga -5'
5479 5' -59.5 NC_001798.1 + 52 0.66 0.728229
Target:  5'- -uUGGGGG-GGGGCG-CGAagGCGg- -3'
miRNA:   3'- auACCCCCgCCCCGCaGUUagUGCga -5'
5479 5' -59.5 NC_001798.1 + 36106 0.66 0.727258
Target:  5'- gGUGGGGGgGGGcccggcuGCGUC--UCGcCGCg -3'
miRNA:   3'- aUACCCCCgCCC-------CGCAGuuAGU-GCGa -5'
5479 5' -59.5 NC_001798.1 + 130307 0.66 0.71848
Target:  5'- aAUGGGcGCGgugccGGGUGUCGcgCAUGCg -3'
miRNA:   3'- aUACCCcCGC-----CCCGCAGUuaGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 98564 0.66 0.71848
Target:  5'- cGUGGGGGCGcuGGUGgccgCGGUgGCGUc -3'
miRNA:   3'- aUACCCCCGCc-CCGCa---GUUAgUGCGa -5'
5479 5' -59.5 NC_001798.1 + 37550 0.67 0.708658
Target:  5'- gGUGGuGuGGCGGGacGUGUC-GUCAUGCg -3'
miRNA:   3'- aUACC-C-CCGCCC--CGCAGuUAGUGCGa -5'
5479 5' -59.5 NC_001798.1 + 15436 0.67 0.708658
Target:  5'- -uUGGGGccccggagucGUGGGGCGgggGGUCGCGUg -3'
miRNA:   3'- auACCCC----------CGCCCCGCag-UUAGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.