Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5480 | 3' | -52.8 | NC_001798.1 | + | 26794 | 0.66 | 0.982589 |
Target: 5'- uGUGUGGUUuauucgggGGUCGggcgggcgggGGUCgGGCGgGCg -3' miRNA: 3'- -CACACCAG--------CCAGCa---------UCAGgUUGCaCG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 128089 | 0.67 | 0.964066 |
Target: 5'- aUGUGGUCGGcgUCGgcGauccCCAACGcacUGCc -3' miRNA: 3'- cACACCAGCC--AGCauCa---GGUUGC---ACG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 14316 | 0.67 | 0.96059 |
Target: 5'- -aGUGGggGGUgCGUGGggaGGCGUGCg -3' miRNA: 3'- caCACCagCCA-GCAUCaggUUGCACG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 92399 | 0.68 | 0.944385 |
Target: 5'- -cGUGGccgCGGUCGUcgGGUCCcgcacGACGgGCc -3' miRNA: 3'- caCACCa--GCCAGCA--UCAGG-----UUGCaCG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 71977 | 0.68 | 0.934852 |
Target: 5'- -gGUGGUCGGggacgCGcugAGggCC-ACGUGCa -3' miRNA: 3'- caCACCAGCCa----GCa--UCa-GGuUGCACG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 125682 | 0.69 | 0.929721 |
Target: 5'- -aGgggGGUCGGggCGaaggAGUCCGACGUcggGCg -3' miRNA: 3'- caCa--CCAGCCa-GCa---UCAGGUUGCA---CG- -5' |
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5480 | 3' | -52.8 | NC_001798.1 | + | 36829 | 0.75 | 0.659901 |
Target: 5'- -aGUGGUCGG-CGUGGggaCCGGCuGUGUg -3' miRNA: 3'- caCACCAGCCaGCAUCa--GGUUG-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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