miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 143384 0.66 0.780352
Target:  5'- cCCACGugcgcgucCGGUgCGGUCCCCGCaaUCGACUc -3'
miRNA:   3'- -GGUGU--------GUCG-GCCAGGGGUGc-GGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 4194 0.66 0.780352
Target:  5'- cCCGCccGCGGCgUGGUCUgCgGCGCUGGCg -3'
miRNA:   3'- -GGUG--UGUCG-GCCAGG-GgUGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 16198 0.66 0.780352
Target:  5'- aCGCACgGGCCGcccUCCgCaCGCGCCG-CCu -3'
miRNA:   3'- gGUGUG-UCGGCc--AGG-G-GUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 48415 0.66 0.780352
Target:  5'- cCCGCuCGGCUucccGUCCCCGcCGCCcccucgaguagcGACCc -3'
miRNA:   3'- -GGUGuGUCGGc---CAGGGGU-GCGG------------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 84507 0.66 0.780352
Target:  5'- cCCGgGCGGCCGccguagggcuUCCCCAucccCGCCaucgcGACCg -3'
miRNA:   3'- -GGUgUGUCGGCc---------AGGGGU----GCGG-----CUGG- -5'
5480 5' -60.4 NC_001798.1 + 109024 0.66 0.780352
Target:  5'- cCCGCGguGCUccccgGGcCUCCG-GCCGGCCc -3'
miRNA:   3'- -GGUGUguCGG-----CCaGGGGUgCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 48989 0.66 0.77503
Target:  5'- cCCAgGcCAGCCGGgggucccaagaacaCCCCA-GCCGcCCc -3'
miRNA:   3'- -GGUgU-GUCGGCCa-------------GGGGUgCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 89653 0.66 0.771459
Target:  5'- gCACACAauacucGCCGaucaCCCCGCGCUgcgcgGGCCc -3'
miRNA:   3'- gGUGUGU------CGGCca--GGGGUGCGG-----CUGG- -5'
5480 5' -60.4 NC_001798.1 + 111495 0.66 0.771459
Target:  5'- -uGCACGGCgCGGaccUCCUCGCGCgucaauccCGACUc -3'
miRNA:   3'- ggUGUGUCG-GCC---AGGGGUGCG--------GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 19991 0.66 0.771459
Target:  5'- -gACGCGGauuCCGGguucUCCCG-GCCGGCCg -3'
miRNA:   3'- ggUGUGUC---GGCCa---GGGGUgCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 25127 0.66 0.771459
Target:  5'- gCCGCGCGGaCGccccccgCCCCGCGgCCGcCCc -3'
miRNA:   3'- -GGUGUGUCgGCca-----GGGGUGC-GGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 71794 0.66 0.771459
Target:  5'- cCCACugGGaCCuGacCCCCACcaccCCGGCCa -3'
miRNA:   3'- -GGUGugUC-GGcCa-GGGGUGc---GGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 115599 0.66 0.771459
Target:  5'- gCC-CACGGCCgGGUCCgguggguCGCCGaguGCCa -3'
miRNA:   3'- -GGuGUGUCGG-CCAGGggu----GCGGC---UGG- -5'
5480 5' -60.4 NC_001798.1 + 149659 0.66 0.771459
Target:  5'- gCCGgGC-GCCGGgucgcgggCCCCGgGCUcggGGCCg -3'
miRNA:   3'- -GGUgUGuCGGCCa-------GGGGUgCGG---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 24925 0.66 0.771459
Target:  5'- cCCGCGCcuGCUGaGcuccgCCgCCGCGCCG-CCg -3'
miRNA:   3'- -GGUGUGu-CGGC-Ca----GG-GGUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 42692 0.66 0.771459
Target:  5'- aCCAC-CGGCguCGGggaaccagUCCCCGuCGCCGucgucGCCa -3'
miRNA:   3'- -GGUGuGUCG--GCC--------AGGGGU-GCGGC-----UGG- -5'
5480 5' -60.4 NC_001798.1 + 42855 0.66 0.771459
Target:  5'- gCCGC-CAGCg---CCCCGCGCCuaaaguGACCc -3'
miRNA:   3'- -GGUGuGUCGgccaGGGGUGCGG------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 55131 0.66 0.771459
Target:  5'- cCCGgGacuaAGCCuGUCgCCCAUGCCcGCCc -3'
miRNA:   3'- -GGUgUg---UCGGcCAG-GGGUGCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 131365 0.66 0.771459
Target:  5'- cCgGCGCGGCCucgggGGaUCCCCugGgggcCCGGCg -3'
miRNA:   3'- -GgUGUGUCGG-----CC-AGGGGugC----GGCUGg -5'
5480 5' -60.4 NC_001798.1 + 40238 0.66 0.771459
Target:  5'- gCACACagcgcccagugGGCCGGUggcugCCCUuauaccCGCaCGACCg -3'
miRNA:   3'- gGUGUG-----------UCGGCCA-----GGGGu-----GCG-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.