miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5483 3' -57.3 NC_001798.1 + 134598 0.66 0.856745
Target:  5'- uCCGCCgACCAGGAaggAGGGcGCCu--- -3'
miRNA:   3'- -GGUGGgUGGUUCUg--UCCCuCGGucuu -5'
5483 3' -57.3 NC_001798.1 + 28978 0.66 0.856745
Target:  5'- uCCGCCCGCCc---CAGGGGGCg---- -3'
miRNA:   3'- -GGUGGGUGGuucuGUCCCUCGgucuu -5'
5483 3' -57.3 NC_001798.1 + 12489 0.66 0.856745
Target:  5'- gCCACCCucCCAcacgggcccagaGGuACAcGGGAGCgGGGAa -3'
miRNA:   3'- -GGUGGGu-GGU------------UC-UGU-CCCUCGgUCUU- -5'
5483 3' -57.3 NC_001798.1 + 15395 0.66 0.856745
Target:  5'- gCGCCCACC-GGACccGGGGuugcgGGuCCGGGAg -3'
miRNA:   3'- gGUGGGUGGuUCUG--UCCC-----UC-GGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 14112 0.66 0.852063
Target:  5'- gCACCCGacaCAcaaucggggcgauggGGugGGGGcaaGGCCAGAAa -3'
miRNA:   3'- gGUGGGUg--GU---------------UCugUCCC---UCGGUCUU- -5'
5483 3' -57.3 NC_001798.1 + 7427 0.66 0.848901
Target:  5'- aCgACCC-CCAcgGGugccCAGGGAGCCuAGAc -3'
miRNA:   3'- -GgUGGGuGGU--UCu---GUCCCUCGG-UCUu -5'
5483 3' -57.3 NC_001798.1 + 10462 0.66 0.848901
Target:  5'- -gGCCgACCAcGGACAGGGuGUaCAGAc -3'
miRNA:   3'- ggUGGgUGGU-UCUGUCCCuCG-GUCUu -5'
5483 3' -57.3 NC_001798.1 + 26568 0.66 0.848901
Target:  5'- gCCACgCCGCCGAGGC-GcGAGCCcguGGAc -3'
miRNA:   3'- -GGUG-GGUGGUUCUGuCcCUCGG---UCUu -5'
5483 3' -57.3 NC_001798.1 + 79360 0.66 0.848901
Target:  5'- gCGCguaCGCCAGGGCcGGcGGCCAGAc -3'
miRNA:   3'- gGUGg--GUGGUUCUGuCCcUCGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 145632 0.66 0.848901
Target:  5'- aCCGcCCCGCCc-GGCAGGGGGgccCCGGc- -3'
miRNA:   3'- -GGU-GGGUGGuuCUGUCCCUC---GGUCuu -5'
5483 3' -57.3 NC_001798.1 + 2007 0.66 0.848901
Target:  5'- cCCGCCCaggcgGCCGuGGCGGGcccgcaGAGCCGGu- -3'
miRNA:   3'- -GGUGGG-----UGGUuCUGUCC------CUCGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 117297 0.66 0.840862
Target:  5'- -gGCCCGCCAcgaaacGGGCGGGGGGgUCAa-- -3'
miRNA:   3'- ggUGGGUGGU------UCUGUCCCUC-GGUcuu -5'
5483 3' -57.3 NC_001798.1 + 27781 0.66 0.832632
Target:  5'- aCGCCaGCCGGGACGGGuGAguucGCUAGGc -3'
miRNA:   3'- gGUGGgUGGUUCUGUCC-CU----CGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 9161 0.66 0.832632
Target:  5'- gCCGCCCgcGCCGggGGGCAGGGucucuGgCGGGu -3'
miRNA:   3'- -GGUGGG--UGGU--UCUGUCCCu----CgGUCUu -5'
5483 3' -57.3 NC_001798.1 + 224 0.66 0.832632
Target:  5'- gCGCCCGCCcccgcgcggcAGGACGGGGA-CUAGc- -3'
miRNA:   3'- gGUGGGUGG----------UUCUGUCCCUcGGUCuu -5'
5483 3' -57.3 NC_001798.1 + 110046 0.66 0.827607
Target:  5'- gCCACCCACCAGuguaGCGGcccgucgcacaacgcGGAGCCccGGAu -3'
miRNA:   3'- -GGUGGGUGGUUc---UGUC---------------CCUCGG--UCUu -5'
5483 3' -57.3 NC_001798.1 + 86070 0.66 0.824221
Target:  5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3'
miRNA:   3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5'
5483 3' -57.3 NC_001798.1 + 47369 0.66 0.824221
Target:  5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3'
miRNA:   3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5'
5483 3' -57.3 NC_001798.1 + 44044 0.66 0.824221
Target:  5'- gCGCCCcCCAAG-CGcGGAGCCuGGAg -3'
miRNA:   3'- gGUGGGuGGUUCuGUcCCUCGGuCUU- -5'
5483 3' -57.3 NC_001798.1 + 30471 0.66 0.824221
Target:  5'- aCGCCCGCCGAcgcGCAGGGAuCCuguGGGg -3'
miRNA:   3'- gGUGGGUGGUUc--UGUCCCUcGGu--CUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.