Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 142052 | 0.7 | 0.610465 |
Target: 5'- cCCACCCccCCGAGACauGGGGAacccCCAGAc -3' miRNA: 3'- -GGUGGGu-GGUUCUG--UCCCUc---GGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2459 | 0.7 | 0.600259 |
Target: 5'- gCCGCCCugCGGGuCGGGGcccucggcgGGCCGGc- -3' miRNA: 3'- -GGUGGGugGUUCuGUCCC---------UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 5973 | 0.7 | 0.619664 |
Target: 5'- gCCGCCgCACCAGGggacaccggcugcGCGGcGGAGaCCGGGAc -3' miRNA: 3'- -GGUGG-GUGGUUC-------------UGUC-CCUC-GGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 151198 | 0.7 | 0.610465 |
Target: 5'- aCCGuguguCCCcCCAGcGACAGGGAGCgCGGGg -3' miRNA: 3'- -GGU-----GGGuGGUU-CUGUCCCUCG-GUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 59102 | 0.7 | 0.630918 |
Target: 5'- -aGCCCAgCGuGGCGGccuGGAGCCAGAGa -3' miRNA: 3'- ggUGGGUgGUuCUGUC---CCUCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 85989 | 0.7 | 0.620687 |
Target: 5'- gCCG-CCGCCGGGGCgcuggcgcagggGGGuGAGCCGGAGa -3' miRNA: 3'- -GGUgGGUGGUUCUG------------UCC-CUCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 60806 | 0.7 | 0.620687 |
Target: 5'- gCGCCCugCAGcacuaucuGGCAGGGcGGCCAGu- -3' miRNA: 3'- gGUGGGugGUU--------CUGUCCC-UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 30366 | 0.7 | 0.64115 |
Target: 5'- uCCACCU-CCGAGGCGGGcAGCaCGGAc -3' miRNA: 3'- -GGUGGGuGGUUCUGUCCcUCG-GUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 1969 | 0.69 | 0.671769 |
Target: 5'- gCGCCCagcGCCGAGACGucGGGGGCgCGGu- -3' miRNA: 3'- gGUGGG---UGGUUCUGU--CCCUCG-GUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 148664 | 0.69 | 0.660564 |
Target: 5'- cCUGCCCACCAccccCAGGGucuggccGGCCAGAc -3' miRNA: 3'- -GGUGGGUGGUucu-GUCCC-------UCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 27214 | 0.69 | 0.671769 |
Target: 5'- -aGCCC-CCGGGGCGGGGcGCgGGGGa -3' miRNA: 3'- ggUGGGuGGUUCUGUCCCuCGgUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 132180 | 0.69 | 0.661584 |
Target: 5'- aCGCCCcCCcGGACgccaccuucuucGGGGAGCUGGAGg -3' miRNA: 3'- gGUGGGuGGuUCUG------------UCCCUCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 104162 | 0.69 | 0.651374 |
Target: 5'- cCCGCCUgggcguCCAGGcACAGGGcGGCCAGc- -3' miRNA: 3'- -GGUGGGu-----GGUUC-UGUCCC-UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 30003 | 0.69 | 0.702098 |
Target: 5'- gCCGCCCcCCGacccucuggggGGGCgAGGGAGgCAGGGa -3' miRNA: 3'- -GGUGGGuGGU-----------UCUG-UCCCUCgGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 129351 | 0.69 | 0.661584 |
Target: 5'- gCGCCCGCCGGGccugGCGGGGcccCCGGAc -3' miRNA: 3'- gGUGGGUGGUUC----UGUCCCuc-GGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 118294 | 0.69 | 0.651374 |
Target: 5'- cCCGCCCcccCCAggggggcuuGGACuGGGAGCCGcGAu -3' miRNA: 3'- -GGUGGGu--GGU---------UCUGuCCCUCGGU-CUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 9033 | 0.69 | 0.651374 |
Target: 5'- aCCGCCCcccgcaGCCAGcGCAcGGcGAGCCAGGu -3' miRNA: 3'- -GGUGGG------UGGUUcUGU-CC-CUCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 152258 | 0.68 | 0.740695 |
Target: 5'- uCCGCCCgggagcucguGCCGGGcCGGGGuuccaugAGCCGGGGu -3' miRNA: 3'- -GGUGGG----------UGGUUCuGUCCC-------UCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 69095 | 0.68 | 0.731896 |
Target: 5'- cCCGCCCGgaccCCAGGGCGGaGGccuCCAGGAg -3' miRNA: 3'- -GGUGGGU----GGUUCUGUC-CCuc-GGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 34974 | 0.68 | 0.751344 |
Target: 5'- gCGgCCGCCGAGguGCGGGGgccccuccGGCCGGGg -3' miRNA: 3'- gGUgGGUGGUUC--UGUCCC--------UCGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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