Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5483 | 3' | -57.3 | NC_001798.1 | + | 66843 | 0.67 | 0.770373 |
Target: 5'- gCGCCCagGCCGGGGuuucCGGGGAgucGCCGGGg -3' miRNA: 3'- gGUGGG--UGGUUCU----GUCCCU---CGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 94564 | 0.67 | 0.770373 |
Target: 5'- uCCGaggCCGCCAAGGCGcGGGucGCCAGc- -3' miRNA: 3'- -GGUg--GGUGGUUCUGU-CCCu-CGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 42459 | 0.67 | 0.779707 |
Target: 5'- gCCAcCCCACgCAucguCAGGGAGCCGu-- -3' miRNA: 3'- -GGU-GGGUG-GUucu-GUCCCUCGGUcuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 27781 | 0.66 | 0.832632 |
Target: 5'- aCGCCaGCCGGGACGGGuGAguucGCUAGGc -3' miRNA: 3'- gGUGGgUGGUUCUGUCC-CU----CGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 117297 | 0.66 | 0.840862 |
Target: 5'- -gGCCCGCCAcgaaacGGGCGGGGGGgUCAa-- -3' miRNA: 3'- ggUGGGUGGU------UCUGUCCCUC-GGUcuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 10462 | 0.66 | 0.848901 |
Target: 5'- -gGCCgACCAcGGACAGGGuGUaCAGAc -3' miRNA: 3'- ggUGGgUGGU-UCUGUCCCuCG-GUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 26568 | 0.66 | 0.848901 |
Target: 5'- gCCACgCCGCCGAGGC-GcGAGCCcguGGAc -3' miRNA: 3'- -GGUG-GGUGGUUCUGuCcCUCGG---UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 145632 | 0.66 | 0.848901 |
Target: 5'- aCCGcCCCGCCc-GGCAGGGGGgccCCGGc- -3' miRNA: 3'- -GGU-GGGUGGuuCUGUCCCUC---GGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 2007 | 0.66 | 0.848901 |
Target: 5'- cCCGCCCaggcgGCCGuGGCGGGcccgcaGAGCCGGu- -3' miRNA: 3'- -GGUGGG-----UGGUuCUGUCC------CUCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 14112 | 0.66 | 0.852063 |
Target: 5'- gCACCCGacaCAcaaucggggcgauggGGugGGGGcaaGGCCAGAAa -3' miRNA: 3'- gGUGGGUg--GU---------------UCugUCCC---UCGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 9161 | 0.66 | 0.832632 |
Target: 5'- gCCGCCCgcGCCGggGGGCAGGGucucuGgCGGGu -3' miRNA: 3'- -GGUGGG--UGGU--UCUGUCCCu----CgGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 224 | 0.66 | 0.832632 |
Target: 5'- gCGCCCGCCcccgcgcggcAGGACGGGGA-CUAGc- -3' miRNA: 3'- gGUGGGUGG----------UUCUGUCCCUcGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 7427 | 0.66 | 0.848901 |
Target: 5'- aCgACCC-CCAcgGGugccCAGGGAGCCuAGAc -3' miRNA: 3'- -GgUGGGuGGU--UCu---GUCCCUCGG-UCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 86070 | 0.66 | 0.824221 |
Target: 5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3' miRNA: 3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 47369 | 0.66 | 0.824221 |
Target: 5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3' miRNA: 3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 44044 | 0.66 | 0.824221 |
Target: 5'- gCGCCCcCCAAG-CGcGGAGCCuGGAg -3' miRNA: 3'- gGUGGGuGGUUCuGUcCCUCGGuCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 30471 | 0.66 | 0.824221 |
Target: 5'- aCGCCCGCCGAcgcGCAGGGAuCCuguGGGg -3' miRNA: 3'- gGUGGGUGGUUc--UGUCCCUcGGu--CUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 25233 | 0.66 | 0.824221 |
Target: 5'- cCgGCCCGCCGAGggccccgacccGCAGGGcGGCUGGc- -3' miRNA: 3'- -GgUGGGUGGUUC-----------UGUCCC-UCGGUCuu -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 28183 | 0.66 | 0.824221 |
Target: 5'- gCCcCCCgaGCgAGGGCGGGGGgaaggcGCCGGAGg -3' miRNA: 3'- -GGuGGG--UGgUUCUGUCCCU------CGGUCUU- -5' |
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5483 | 3' | -57.3 | NC_001798.1 | + | 133841 | 0.66 | 0.821663 |
Target: 5'- gCUuCCCACCGAGgccuggcccaugauGCAGGGGGCgGuGAAc -3' miRNA: 3'- -GGuGGGUGGUUC--------------UGUCCCUCGgU-CUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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